Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             28   7.7  

>SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 736 VFVSGDDSLVSPPPPAHPDWDAVSPLLSL 650
           ++++  D L SPPPP  P +D + PL +L
Sbjct: 10  LYINSRDELSSPPPPPEPMYD-LGPLAAL 37


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 188 QKSSCKTPSTEGSEXRGAKRVRVINVGGRSYPEE 289
           Q+S+  TP    ++ R  +R+R +NVG  + P E
Sbjct: 33  QRSTAGTPIRNRTDIRSDRRMRQVNVGDPTVPSE 66


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 312 GETEGKHCLTKMF-GHFSYFEGEFLFLGTFTAKEIKKRALVNHL 440
           GE +G  CL   F G+ SYF  E+LF   F    I     V HL
Sbjct: 605 GENKGYTCLAHNFKGYDSYFILEYLFKNGFKPSVIFAGGKVMHL 648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,093,670
Number of Sequences: 59808
Number of extensions: 541120
Number of successful extensions: 1418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)