Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    29   3.9  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    29   3.9  
Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 358 KCPNIFVRQCFPSVSPGYHAPSMLFWIGPPAYVYYSHSFRPPXFRSFCRGCFATGFL 188
           K P      C  ++S  +    ++FWI   AY+Y+   F+    R+    C    FL
Sbjct: 108 KLPTNVYLLCLAAMSSIFLLSLLVFWIEEVAYIYFYDIFQDSLLRNSYYSCIFNTFL 164


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 398 HGKRNQKARSGKSLDLLARESRKRRRESGLQQ 493
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 97  HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 128


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 398 HGKRNQKARSGKSLDLLARESRKRRRESGLQQ 493
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 205 HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 236


>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 419 LFDFFCRECSKEQKLALKIGEVPEHLCQTML 327
           + D++  + +K+ K+ +KIGE+P+ L +T L
Sbjct: 8   VIDYYHSKINKDSKMEIKIGELPKVLNKTYL 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,591
Number of Sequences: 27780
Number of extensions: 398489
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)