Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro...    29   3.6  
At1g70100.1 68414.m08065 expressed protein                             29   3.6  
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen...    28   6.3  
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen...    28   6.3  
At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protei...    28   6.3  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    28   6.3  
At1g12020.1 68414.m01388 expressed protein                             28   6.3  
At5g59190.1 68418.m07418 subtilase family protein contains simil...    28   8.3  
At2g32540.1 68415.m03975 cellulose synthase family protein simil...    28   8.3  
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    28   8.3  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    28   8.3  

>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
           P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
          Length = 499

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 405 KEIKKRALVNHLICWQES-PESVAERVAYNKLTEVSAILSG 524
           KE K+  +V+HL+C QE+ PE   +R+   K T +S I  G
Sbjct: 263 KEKKENTMVDHLLCLQETQPEYYMDRII--KGTMLSLIAGG 301


>At1g70100.1 68414.m08065 expressed protein
          Length = 467

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 236 GAKRVRVINVGG--RSYPEEHRGGVITRRNRGKALSDKDVRALL 361
           G K VR+    G  R  P  HR   +  ++ G A   KDVR  +
Sbjct: 414 GQKNVRLAKSDGTERKGPNSHRSSSVVSKSNGTAEKQKDVRCFM 457


>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
           homogentisicase/homogentisate oxygenase / homogentisic
           acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
           1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
           (Homogentisate oxygenase) (Homogentisic acid oxidase)
           {Arabidopsis thaliana}; contains Pfam profile PF04209:
           homogentisate 1,2-dioxygenase
          Length = 461

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 352 PNIFVRQCFPSVSPGYHAPSMLFWIGPPAYVYYSHSFRPPXFRSFCRGCF 203
           P+I      P+  PG     + F I PP ++   H+FRPP +   C   F
Sbjct: 301 PSINTVLTAPTDKPG--VALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEF 348


>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
           homogentisicase/homogentisate oxygenase / homogentisic
           acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
           1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
           (Homogentisate oxygenase) (Homogentisic acid oxidase)
           {Arabidopsis thaliana}; contains Pfam profile PF04209:
           homogentisate 1,2-dioxygenase
          Length = 461

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 352 PNIFVRQCFPSVSPGYHAPSMLFWIGPPAYVYYSHSFRPPXFRSFCRGCF 203
           P+I      P+  PG     + F I PP ++   H+FRPP +   C   F
Sbjct: 301 PSINTVLTAPTDKPG--VALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEF 348


>At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protein,
           putative similar to CND41, chloroplast nucleoid DNA
           binding protein [Nicotiana tabacum] GI:2541876; contains
           Pfam profile PF00026: Eukaryotic aspartyl protease
          Length = 474

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 290 HRGGVITRRNRGKALSDKDVRALLLF*GRVFVPWNIHGKRNQK-----ARSGKSLDLLAR 454
           HR G  +R N GKA S   V  L L   RV    +IH K ++K         KS DL A+
Sbjct: 66  HRHGTCSRLNNGKATSPDHVEILRLDQARVN---SIHSKLSKKLATDHVSESKSTDLPAK 122

Query: 455 E 457
           +
Sbjct: 123 D 123


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 328 FPSVSPGYHAPS--MLFWIGPPAYVYYSHSFRPPXFRS 221
           + S  P YH+PS  + +   PP YVY SH   PP + S
Sbjct: 509 YSSPPPPYHSPSPKVNYKSPPPPYVYSSH---PPPYYS 543


>At1g12020.1 68414.m01388 expressed protein
          Length = 226

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 392 NIHGKRNQKARSGKSLDLLARES 460
           N+ GK++++ RSGKS  LLA  S
Sbjct: 127 NVTGKKDRRKRSGKSSSLLASSS 149


>At5g59190.1 68418.m07418 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 693

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 357 FSYFEGEFLFLGTFTAKEIKKRALVNHLICWQESPESV-AERVAYN 491
           F + E +  F+ T + KE+K  + V+  + W +   SV +  VAY+
Sbjct: 645 FGFLEEKKSFVVTISGKELKDGSFVSSSVVWSDGSHSVRSPIVAYS 690


>At2g32540.1 68415.m03975 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 518 QNSAYLSEFVVG-HSLGDAFWTLLPADQVIYQSALF 414
           Q+ AYL  F  G  S+ + F+ LLPA  +++ SALF
Sbjct: 530 QSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALF 565


>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 427 RARFLISFAVNVPRNKNSPSK*EKCPNIFVRQCFPSVSPGYHAPSMLFWIGPPAYVYYSH 248
           + R LISF  + PRN N      + PN  +R       P  H P ++    P   V  + 
Sbjct: 441 KQRILISFIKSKPRNSNWGPPPSRSPNQHIRH---PTGPPKHYPVVI----PSTGVLPTP 493

Query: 247 SFRPP 233
           S RPP
Sbjct: 494 SHRPP 498


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 427 RARFLISFAVNVPRNKNSPSK*EKCPNIFVRQCFPSVSPGYHAPSMLFWIGPPAYVYYSH 248
           + R LISF  + PRN N      + PN  +R       P  H P ++    P   V  + 
Sbjct: 441 KQRILISFIKSKPRNSNWGPPPSRSPNQHIRH---PTGPPKHYPVVI----PSTGVLPTP 493

Query: 247 SFRPP 233
           S RPP
Sbjct: 494 SHRPP 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,075
Number of Sequences: 28952
Number of extensions: 387117
Number of successful extensions: 1234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)