Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021168
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 136 3e-33
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 99 3e-22
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 86 4e-18
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 84 2e-17
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 81 2e-16
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 80 3e-16
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 71 1e-13
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 66 5e-12
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 29 0.49
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 4.6
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 8.0
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 136 bits (329), Expect = 3e-33
Identities = 64/77 (83%), Positives = 71/77 (92%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
+S DG++TVTNDGATIL M+VEHQI KLLVQL++SQDDEIGDGTTGVVVLAGALLEQA
Sbjct: 64 ISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAE 123
Query: 436 NLLDKGIHPIRIADGYE 486
L+DKGIHPIRIADGYE
Sbjct: 124 ALIDKGIHPIRIADGYE 140
Score = 73.3 bits (172), Expect = 3e-14
Identities = 30/51 (58%), Positives = 43/51 (84%)
Frame = +2
Query: 101 DEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
D+ G PFI++RDQ++++RL G DA+KSHI A + +A+ +RTSLGPRGLDK+
Sbjct: 12 DDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKI 62
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = +3
Query: 492 CRPGTDHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXE 671
C+ HLD++S+ + NL A T+LGSKVV K H A I +
Sbjct: 143 CQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQ 202
Query: 672 TRDVNFELIKVE 707
+DV+FELIKV+
Sbjct: 203 RKDVDFELIKVD 214
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 99 bits (238), Expect = 3e-22
Identities = 46/78 (58%), Positives = 57/78 (73%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V GDVTVTNDGATIL ++DVEH GK+LV+LAQ QD E+GDGTT VV++A LL +A+
Sbjct: 51 VDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRAN 110
Query: 436 NLLDKGIHPIRIADGYEM 489
L+ IHP I GY +
Sbjct: 111 ELVKNKIHPTTIITGYRL 128
Score = 33.1 bits (72), Expect = 0.040
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 149 KRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
++++G D ++ A IA+ +++SLGP GLDK+
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKM 49
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 86.2 bits (204), Expect = 4e-18
Identities = 41/73 (56%), Positives = 53/73 (72%)
Frame = +1
Query: 268 GDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLD 447
G+V +TNDGATILK + V H K+LV L+ +QD E GDGTT VV+LAG++L A LL
Sbjct: 53 GEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLK 112
Query: 448 KGIHPIRIADGYE 486
KGIHP IA+ ++
Sbjct: 113 KGIHPTVIAESFQ 125
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 137 QDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
QDR+K + S+I AAR +A +RTSLGP+G+DK+
Sbjct: 12 QDREKP---QEVRLSNIMAARSVADAIRTSLGPKGMDKM 47
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 84.2 bits (199), Expect = 2e-17
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASN 438
+S GD+ VTNDGATILK + +++ K+LV +++ QDDE+GDGTT V V A LL QA
Sbjct: 52 NSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEI 111
Query: 439 LLDKGIHPIRIADGYEM 489
+++ IHP I DGY +
Sbjct: 112 MVNAKIHPQVIIDGYRI 128
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 116 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
P I + Q+R G +A S A + ++++LGP+G+DK+
Sbjct: 5 PHQIFNESGIQER--GENARLSSFVGAIAVGDLVKSTLGPKGMDKI 48
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V G+V ++NDGATI+K++D+ H K LV +A++QD E+GDGTT VVV AG LL +A
Sbjct: 54 VDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREAR 113
Query: 436 NLLDKGIHPIRIADGY 483
++ G+ I GY
Sbjct: 114 TFVEDGVSSHLIIRGY 129
Score = 32.7 bits (71), Expect = 0.053
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 116 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
P I+L++ + G + S+I A + T+RT+LGP G DKL
Sbjct: 9 PVIVLKEGTDDSQ--GRGQLLSNINACVAVQDTIRTTLGPLGADKL 52
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 80.2 bits (189), Expect = 3e-16
Identities = 34/66 (51%), Positives = 50/66 (75%)
Frame = +1
Query: 268 GDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLD 447
G V +TNDG IL+ ++V H K +++LA++QD+E+GDGTT V++LAG +L AS LLD
Sbjct: 53 GSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLD 112
Query: 448 KGIHPI 465
+ IHP+
Sbjct: 113 RKIHPV 118
Score = 33.9 bits (74), Expect = 0.023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 152 RLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
R G A S+IQAA+ +A +RT LGPR + K+
Sbjct: 14 RQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKM 47
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/70 (45%), Positives = 46/70 (65%)
Frame = +1
Query: 280 VTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIH 459
+TND ATI++ ++V H KL+V Q Q++E+GD VVV G LL +A N++ G+
Sbjct: 64 LTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123
Query: 460 PIRIADGYEM 489
P+ IA GYEM
Sbjct: 124 PLEIAKGYEM 133
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 167 DAIKSHIQAARQIASTLRTSLGPRGLDKL 253
DA+ + A R+++ RTSLGP G +K+
Sbjct: 26 DAVIRNCNAIRELSEITRTSLGPNGKNKI 54
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V G + +T DG +L M +++ + + A +QDD GDGTT V +L G LL+QA
Sbjct: 46 VDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAE 105
Query: 436 NLLDKGIHPIRIADGYEM 489
+ +G+HP I+DG+ +
Sbjct: 106 LYIREGLHPSLISDGFNL 123
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 335 VNYLCNWLRVKMTKLVMVPQGLLFLLVHSLSKPQICWTKVSI 460
+NYL WL V L+ V G+LF++ + S + + K+SI
Sbjct: 146 MNYLHRWLSVYAV-LISVLHGILFMIFSAQSYKPLLYDKISI 186
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 220 AKSACNLSGCLYM*LYGIGTGKSFLSILIP 131
+ S +L C Y + GIG K F SI++P
Sbjct: 350 SSSVVDLHYCPYEDILGIGHAKGFESIIVP 379
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 532 ASLTLSRWSVPGRQPSHNHRLYESDG 455
AS T S SVP + PS NH+ +++G
Sbjct: 293 ASATSSPPSVPQKIPSSNHKSQQANG 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,540
Number of Sequences: 5004
Number of extensions: 60111
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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