Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021168
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 130 8e-31
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 79 3e-15
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 49 3e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 46 4e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 43 3e-04
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 38 0.006
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 35 0.056
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 31 1.2
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 30 1.6
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 28 6.5
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) 28 6.5
SB_10953| Best HMM Match : HALZ (HMM E-Value=0.25) 28 6.5
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_113| Best HMM Match : HALZ (HMM E-Value=0.32) 28 6.5
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25) 28 6.5
SB_15374| Best HMM Match : TSC22 (HMM E-Value=0.11) 28 6.5
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 130 bits (315), Expect = 8e-31
Identities = 62/78 (79%), Positives = 71/78 (91%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
VS DG+VTVTNDGATIL MM+V+HQI KL+V+L++SQD+EIGDGTTGVVVLAGALLE A
Sbjct: 60 VSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAE 119
Query: 436 NLLDKGIHPIRIADGYEM 489
LLD GIHPIRIADGYE+
Sbjct: 120 QLLDWGIHPIRIADGYEL 137
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +3
Query: 507 DHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVN 686
+H+DS+++ FPV+K+ +E+LI AMTTLGSK+V +CHR +AEI E +DV+
Sbjct: 144 EHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVD 203
Query: 687 FELIKVE 707
FELIKVE
Sbjct: 204 FELIKVE 210
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +2
Query: 176 KSHIQAARQIASTLRTSLGPRGLDKL 253
+SHI AAR +AS L+TSLGP+G+DK+
Sbjct: 33 QSHILAARAVASILKTSLGPKGMDKM 58
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/73 (49%), Positives = 52/73 (71%)
Frame = +1
Query: 265 DGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLL 444
+G++ VTNDGATILK + +++ K+LV+L++ QDDE+GDGTT V VL LL++A L+
Sbjct: 55 NGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLV 114
Query: 445 DKGIHPIRIADGY 483
IHP I G+
Sbjct: 115 SCKIHPQTIVAGW 127
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 69.3 bits (162), Expect = 3e-12
Identities = 27/70 (38%), Positives = 48/70 (68%)
Frame = +1
Query: 280 VTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIH 459
+TNDG IL+ + V+H K +++++++QD+E+GDGTT V++LAG + A L++ +H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 460 PIRIADGYEM 489
P +I Y +
Sbjct: 61 PTQIIAAYRL 70
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/59 (35%), Positives = 40/59 (67%)
Frame = +1
Query: 313 MDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEM 489
+ V+H K +++++++QD+E+GDGTT V++LAG + A L++ +HP +I Y +
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 55.2 bits (127), Expect = 5e-08
Identities = 24/71 (33%), Positives = 43/71 (60%)
Frame = +1
Query: 277 TVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGI 456
T+ G ++ ++H L+ ++A +QDD GDGTT V++ G LL+QA + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216
Query: 457 HPIRIADGYEM 489
HP + +G+E+
Sbjct: 217 HPRLVTEGFEV 227
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 170 AIKSHIQAARQIASTLRTSLGPRGLDKL 253
A+ +I AAR + L+T+LGP+G K+
Sbjct: 19 ALSLNITAARGLQDVLKTNLGPKGTMKI 46
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1
Query: 352 LAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGY 483
L++ QDDE+GDGTT V VLA LL++A L+ IHP I G+
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGW 45
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDE 375
V G T++NDGATI+ ++D+ H K LV +A+SQD E
Sbjct: 685 VDGRGKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 161 GTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
G + S+I A + IA +RT+LGPRG+DKL
Sbjct: 653 GIPQLISNIDACQFIADAVRTTLGPRGMDKL 683
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +1
Query: 262 SDGDVTVTNDGATILKMMDVEHQ---IGKLLVQ-LAQSQDDEIGDGTTGVVVLAGALLEQ 429
S G +T DG T+ K ++++ + IG LVQ +A + ++E GDGTT VLA ++ +
Sbjct: 99 SFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATE 158
Query: 430 ASNLLDKGIHPIRIA 474
+ KG +P ++
Sbjct: 159 GFLHVSKGANPQEVS 173
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/61 (22%), Positives = 35/61 (57%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASN 438
SS G++ +TN G+ IL+ + + + +++V+ A+S G G + +++ + + +N
Sbjct: 31 SSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIIILAEIFREIAN 90
Query: 439 L 441
+
Sbjct: 91 I 91
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 35.1 bits (77), Expect = 0.056
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 179 SHIQAARQIASTLRTSLGPRGLDKL 253
++I AA+ +A +RTSLGP+G+DK+
Sbjct: 28 TNITAAKAVADAIRTSLGPKGMDKM 52
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 265 DGDVTVTNDGATI--LKMMDVE-HQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALL 423
+GDVT+TNDGATI + +D+E +GK +V A G+ LA +L
Sbjct: 57 NGDVTITNDGATIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYWALAECIL 112
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 529 SLTLSRWSVPGRQPSHNHRLYESDGYLCPTDLRLAQGVHQQEQQPLWYH 383
S T + W+ P + ++ E+ YLC + A H + Q WYH
Sbjct: 435 SKTWANWNHPSKNQANCRHPTETPAYLCHPNKTQANCGHPAKTQANWYH 483
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 662 CHSQDSINSYFCHQPVTLDH-HFTAQGCHGHL 570
CH+ ++ + H PVT H H T CH H+
Sbjct: 445 CHNHITVTTCHDHIPVTTCHYHITVTTCHNHI 476
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -1
Query: 562 FSLVFLLTGKASLTLSRWSVP-GRQPSHNH-RLYESDGYLCPTDLRLAQGVHQQEQQPLW 389
+++V ++TG + T + + + PS + S G + T ++ E PLW
Sbjct: 1186 YNIVLVVTGNETTTFAMYGIKTDNLPSGGTCDVLPSVGKVIETSFQITCTRWADEDSPLW 1245
Query: 388 YHHQFRHLDSEPI 350
Y F H S P+
Sbjct: 1246 YEFFFDHAQSGPM 1258
>SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 317 TLSIRLVNYLCNWLRVKMTKLVMVPQGLLFL 409
TL + +V +LC W + + L+ +G+LFL
Sbjct: 241 TLFVTVVGFLCCWTPILIMDLIEFARGILFL 271
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 53 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 83
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 606 PPLYCP--RLSWPPKLNFPSYSC*LGKLH*RCQDGQCQGGSH 487
P +YCP RLS+P Y C G+ D QCQ G +
Sbjct: 1329 PGMYCPTYRLSYPSGNCSEGYYCPAGETKQSPPDKQCQPGHY 1370
>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
Length = 1047
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 53 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 83
>SB_10953| Best HMM Match : HALZ (HMM E-Value=0.25)
Length = 319
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 187 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 217
>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 363 TLSQLHK*FTNLMLNVHHF*NCSPII-CYCHITIRRHLSLSRPRGPRDVRRV--LAICRA 193
T S+L + F+ L + V+ P++ CY H + + + RGP D+R+ L R
Sbjct: 1029 TASRLLRPFSILRVYVYR-----PVVECYAHRECVKRFANAILRGPTDLRKTERLPFRRL 1083
Query: 192 ACICDFMASV 163
C+C + V
Sbjct: 1084 QCVCTYTEGV 1093
>SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)
Length = 255
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 53 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 83
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 282 YCHITIRRHLSLSRPRGPRDVRRV 211
Y +T RRHL PR P+D+R +
Sbjct: 182 YLPLTTRRHLYWESPRKPKDLRAI 205
>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
Length = 477
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 268 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 298
>SB_15374| Best HMM Match : TSC22 (HMM E-Value=0.11)
Length = 262
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 281 TVTSPSDDT*AYQDRGDQEMCEECLQFVGLP 189
T+T D A D +Q M ECL+F G+P
Sbjct: 53 TITDKLRDQEAILDEQEQYMRRECLEFKGIP 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,574,450
Number of Sequences: 59808
Number of extensions: 490892
Number of successful extensions: 1146
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -