Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021168
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 507 DHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHR 620
           DH ++V + +P+ + T E++    +  +G    +  HR
Sbjct: 549 DHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHR 586


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 507 DHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHR 620
           DH ++V + +P+ + T E++    +  +G    +  HR
Sbjct: 517 DHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHR 554


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 492 SHLITIGYTNRMDTFV 445
           +HL  +GY  ++DT+V
Sbjct: 102 NHLKQLGYVQKLDTWV 117


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 259 SSDGDVTVTNDGATILKMMD 318
           SSD  VT++    T+ +MMD
Sbjct: 229 SSDSGVTMSTSRLTLSEMMD 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,543
Number of Sequences: 438
Number of extensions: 5235
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)