Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021168
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 125 3e-29
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 97 8e-21
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 95 3e-20
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 88 5e-18
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 86 2e-17
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 81 5e-16
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 79 4e-15
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 73 1e-13
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 73 1e-13
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 73 2e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 69 2e-12
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 50 2e-06
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 48 5e-06
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 46 2e-05
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 46 2e-05
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 46 2e-05
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 27 9.2
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 9.2
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 27 9.2
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 27 9.2
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 125 bits (302), Expect = 3e-29
Identities = 57/75 (76%), Positives = 69/75 (92%)
Frame = +1
Query: 265 DGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLL 444
DGD+T+TNDGATIL+ MDV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA L
Sbjct: 61 DGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQL 120
Query: 445 DKGIHPIRIADGYEM 489
D+GIHPIRIA+GYEM
Sbjct: 121 DRGIHPIRIAEGYEM 135
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = +2
Query: 89 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G+DK+
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKM 56
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +3
Query: 495 RPGTDHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXET 674
R +HL+ +++ F + N E L+ MTTL SK+V +C R +AEI E
Sbjct: 138 RVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLER 197
Query: 675 RDVNFELIKVE 707
RDVN +LIKVE
Sbjct: 198 RDVNLDLIKVE 208
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = +1
Query: 313 MDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEM 489
MDV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA LD+GIHPIRIA+GYEM
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEM 59
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +3
Query: 495 RPGTDHLDSVSEAFPVNKNTRENLI*VAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXET 674
R +HL+ +++ F + N E L+ MTTL SK+V +C R +AEI E
Sbjct: 62 RVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLER 121
Query: 675 RDVNFELIKVE 707
RDVN +LIKVE
Sbjct: 122 RDVNLDLIKVE 132
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V GDVT+TNDGATIL+M++VEH K+LV+LA+ QD E+GDGTT VV++A LL++A+
Sbjct: 49 VDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRAN 108
Query: 436 NLLDKGIHPIRIADGYEM 489
+L+ IHP I GY +
Sbjct: 109 DLVRNKIHPTSIISGYRL 126
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 152 RLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
R +G D ++ A + +++ ++TSLGP GLDK+
Sbjct: 14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKM 47
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = +1
Query: 274 VTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKG 453
VTVTNDGATILK + +++ K+LV +++ QDDE+GDGTT VVVLAG LL +A L+
Sbjct: 56 VTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASK 115
Query: 454 IHPIRIADGYEM 489
IHP+ I GY M
Sbjct: 116 IHPMTIIAGYRM 127
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/73 (54%), Positives = 55/73 (75%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASN 438
+++G+V +TNDGATIL M+V K+LV+L++SQD GDGTT VVV+AGALL++ +
Sbjct: 59 TANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQS 118
Query: 439 LLDKGIHPIRIAD 477
LL GIHP I+D
Sbjct: 119 LLTNGIHPTVISD 131
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 179 SHIQAARQIASTLRTSLGPRGLDKL 253
++I +AR ++ +RTSLGP+G+DK+
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKM 56
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 81.4 bits (192), Expect = 5e-16
Identities = 34/72 (47%), Positives = 51/72 (70%)
Frame = +1
Query: 268 GDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLD 447
G VT++NDGATI+K++D+ H K+LV +A+SQD E+GDGTT VV+LA L++A ++
Sbjct: 57 GSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIE 116
Query: 448 KGIHPIRIADGY 483
G+H + Y
Sbjct: 117 DGVHAQNLIRSY 128
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 161 GTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
G + S+I A + +RT+LGPRG+DKL
Sbjct: 21 GKAQLVSNINACTAVGDVVRTTLGPRGMDKL 51
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
+ + G + VTNDG IL+ +DV H K +++L+++QD+E+GDGTT V+VLAG +L A
Sbjct: 49 LDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE 108
Query: 436 NLLDKGIHPIRIADGY 483
L+K HP I Y
Sbjct: 109 AFLEKNYHPTVICRAY 124
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 116 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKL 253
P ++L D KR +G+ +IQA++ +A +RT+LGPR + K+
Sbjct: 4 PVLVLSDS--LKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKM 47
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V GD+ +T DG T+LK M +++ ++ + A +QDD GDGTT V+ G L++Q+
Sbjct: 47 VGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSE 106
Query: 436 NLLDKGIHPIRIADGYEM 489
+D+G+HP + DG+E+
Sbjct: 107 RCIDEGMHPRVLVDGFEI 124
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +1
Query: 256 VSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
V GD+ +T DG T+LK M +++ ++ + A +QDD GDGTT V+ G L++Q+
Sbjct: 47 VGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSE 106
Query: 436 NLLDKGIHPIRIADGYEM 489
+D+G+HP + DG+E+
Sbjct: 107 RCIDEGMHPRVLVDGFEI 124
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/54 (57%), Positives = 45/54 (83%)
Frame = +2
Query: 89 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDK 250
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G++K
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +1
Query: 280 VTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIH 459
VTND ATI+ ++++H KLLV A++Q +EIGDG + AG LL+ A L+ G+H
Sbjct: 65 VTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLH 124
Query: 460 PIRIADGY 483
P I GY
Sbjct: 125 PSEIISGY 132
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 149 KRLTGTD-AIKSHIQAARQIASTLRTSLGPRGLDKL 253
+ L+G D A+ +I+A +++++ RTSLGP G++K+
Sbjct: 20 RHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKM 55
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +1
Query: 268 GDVTVTNDGATILKMMDVE---HQIG-KLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS 435
G + NDG T+LK +++E +G KL+ Q +D GDG+T ++LA L+ +
Sbjct: 84 GPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGI 143
Query: 436 NLLDKGIHPIRIADGYE 486
++ G +PI++A G E
Sbjct: 144 KVISAGTNPIQVARGIE 160
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQDDEIGDGTTGVVVLAGALLE 426
S G + NDG T+ + +++E + KL+ Q A +D GDGTT VVLA L+
Sbjct: 93 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIA 152
Query: 427 QASNLLDKGIHPIRIADGYE 486
+ ++ G +P+ I G E
Sbjct: 153 EGVKVVAAGANPVLITRGIE 172
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQDDEIGDGTTGVVVLAGALLE 426
S G + NDG T+ + +++E + KL+ Q A +D GDGTT VVLA +
Sbjct: 93 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 152
Query: 427 QASNLLDKGIHPIRIADGYE 486
+ ++ G +P+ I G E
Sbjct: 153 EGVKVVAAGANPVLITRGIE 172
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQDDEIGDGTTGVVVLAGALLE 426
S G + NDG T+ + +++E + KL+ Q A +D GDGTT VVLA +
Sbjct: 97 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 156
Query: 427 QASNLLDKGIHPIRIADGYE 486
+ ++ G +P+ I G E
Sbjct: 157 EGVKVVAAGANPVLITRGIE 176
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 SSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQDDEIGDGTTGVVVLAGALLE 426
S G + NDG T+ + +++E + KL+ Q A +D GDGTT VVLA +
Sbjct: 97 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 156
Query: 427 QASNLLDKGIHPIRIADGYE 486
+ ++ G +P+ I G E
Sbjct: 157 EGVKVVAAGANPVLITRGIE 176
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 289 DGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNL 441
+G T++ ++D E Q+G L V +++ DE+G T +V + +NL
Sbjct: 32 EGHTVV-VLDREKQVGGLWVYTPETESDELGLDPTRPIVHSSVYKSLRTNL 81
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 319 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS--NLLDKGIHP 462
+E + LVQ+ +S D +I DG+T +V L+ + L S +L+ G+ P
Sbjct: 263 IEGREENYLVQVIRSPDGKISDGSTNLVALSFSDLFPCSMDDLVPVGVGP 312
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -1
Query: 475 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 332
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 172 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 224
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -1
Query: 475 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 332
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 171 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,817
Number of Sequences: 28952
Number of extensions: 339813
Number of successful extensions: 797
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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