Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021167
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.35 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.35 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.7  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   7.6  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
           PP+    + +G +IL SL+ F  + +    TTS A PL
Sbjct: 236 PPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
           PP+    + +G +IL SL+ F  + +    TTS A PL
Sbjct: 236 PPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 380 STDPYGVLPLWRSNDLN 430
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 305 IVHRKCF*THRASLPPAPAAGCSIQACNLR 216
           +VH KC     A   PAPA   +  A   R
Sbjct: 262 LVHHKCGGEEEAERAPAPAVRAAGDAAAAR 291


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 631 GSLPPFVLGYGSLRHP 584
           G + PFV+GY    HP
Sbjct: 36  GCVSPFVIGYVKHFHP 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,404
Number of Sequences: 336
Number of extensions: 4194
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)