Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021167
(718 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 149 3e-38
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.7
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 23 2.9
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 23 2.9
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 23 2.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 8.8
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 149 bits (360), Expect = 3e-38
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = -2
Query: 717 ASSSSLEKSYELPDGQVITIGNERFRCPEALFHPSFLGMEACGIHETTYNSIMKCDVDIR 538
ASSSSLEKSYELPDGQVITIGNERFRCPEALF PSFLGMEACGIHETTYNSIMKCDVDIR
Sbjct: 6 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIR 65
Query: 537 KDLYANTVLS 508
KDLYANTVLS
Sbjct: 66 KDLYANTVLS 75
Score = 115 bits (276), Expect = 5e-28
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = -1
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 344
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQM
Sbjct: 76 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQM 130
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
PP+ + +G +IL SL+ F + + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
PP+ + +G +IL SL+ F + + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
PP+ + +G +IL SL+ F + + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
PP+ + +G +IL SL+ F + + + TTS A PL
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 324
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 415 PPERKYSVWIGGSILASLSTFQQM*SRNRSTTSLAPPL 302
P E V +G SIL SL F + S+ TSL PL
Sbjct: 258 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPL 295
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 23.0 bits (47), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
R V+ F S + Y VVP ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 23.0 bits (47), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
R V+ F S + Y VVP ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 23.0 bits (47), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
R V+ F S + Y VVP ++ W TS
Sbjct: 11 RKVLGFGYESNVK-YQVVPSALQMWSTS 37
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -3
Query: 575 HITPS*SATWTSVRTCTPTPYCRWY 501
H+ S + V PTP RWY
Sbjct: 248 HVAQDESTSLVCVAQACPTPEYRWY 272
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 405 GSTPYGSVDRSSPPSLPSNRCDLET 331
G+ G+ DRS P L CD+++
Sbjct: 1869 GNVVPGNGDRSDRPELSEAECDIDS 1893
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -3
Query: 575 HITPS*SATWTSVRTCTPTPYCRWY 501
H+ S + V PTP RWY
Sbjct: 248 HVAQDESTSLVCVAQACPTPEYRWY 272
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 405 GSTPYGSVDRSSPPSLPSNRCDLET 331
G+ G+ DRS P L CD+++
Sbjct: 1865 GNVVPGNGDRSDRPELSEAECDIDS 1889
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 615 SFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSV 505
+FLG+ + +YN + D + KDL+ +L +
Sbjct: 330 TFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDL 366
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,471
Number of Sequences: 438
Number of extensions: 5162
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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