Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021166
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   0.86 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    28   1.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   4.6  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   4.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   6.0  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   6.0  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   6.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   8.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.0  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   8.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.0  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   8.0  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 690 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 541
           ++LL       C  ++  L+LN+ +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 147 DKKEVAPEEVTSTEPKESPVKKSP---AKKVEAAESNGKRMVPMKPQKIRLLK 296
           D  +V+P++ +   PK + + +S     KK E +E+N K  V M P  +++LK
Sbjct: 650 DLLKVSPQQKSEVPPKRNELSQSKLKNRKKKENSETN-KNHVDMSPGFVKILK 701


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 TDEAPEDSPAENGDAEESND-ASENGDATEKKET 361
           T+E  E S   + D+E S+D +SE+GD+    ++
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDS 227


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 614 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALRK 504
           RA P ++ G     N  + + Y D     MGIDAL +
Sbjct: 36  RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALEE 72


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 269 EAPEDSPAENGDAEESNDASENGDATEK 352
           E PEDS  E+G +E + D SE+G+  E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 341 HHRSQMHRCFLQ--HHHFQQANLLGLHRYHSFAITFCSF 231
           HH SQ ++C L+  HH     N +G  R H F    C +
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGF-RNHKFFFLECFY 148


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 398 FLHQEPQISSSHQSLSFLWHHRSQMHRCFLQHHHFQQANLLGLHRYHSFAIT 243
           F+HQ PQ  + + SL F+ +    +   +   H +    +  L+ + S A T
Sbjct: 238 FIHQNPQYLAQNNSLDFIVNDHQGLSGDYNLCHFWSNFEIANLNFFRSPAYT 289


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 251 QKNGTDEAPEDSPAENGDA--EESNDASENGDATEKKETGVKRKSV 382
           ++   +EA  ++  ++ +A  EE   A  N   TEKKET +K  +V
Sbjct: 404 ERKEENEAEAEAVFDDWEAALEEPEVAENNEVVTEKKETDIKSDAV 449


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 284 SPAENGDAEESNDASENGDAT 346
           SP  NGD  E    +ENG+ T
Sbjct: 9   SPTTNGDKNEDGYPAENGEGT 29


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDA 343
           QK  +  A   SPA NG     N+AS +  A
Sbjct: 131 QKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 265 GTILLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIV 125
           GTI   ++S + TF +     G + G+VEV    A +   T  S  V
Sbjct: 421 GTITKTIVSGSKTFTSTFPANGTTSGTVEVVEPTAGTITETIVSGSV 467


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 251 QKNGTDE---APEDSPAENGDAEESNDASENGDATEKKE 358
           +KNG  E   + +DS  ++ +  ESND S + DA  + +
Sbjct: 376 KKNGIQEDSQSTDDSSKDDDNNSESNDMSPHNDAETRAD 414


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 278 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 379
           E+   E+    E NDA+E G +  +K+   K+KS
Sbjct: 22  ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,850
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)