Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021166
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44780.1 68414.m05130 expressed protein ; expression supporte... 35 0.046
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.11
At2g22795.1 68415.m02704 expressed protein 33 0.14
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 32 0.43
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 32 0.43
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 31 0.98
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi... 30 1.7
At4g30930.1 68417.m04391 50S ribosomal protein L21, mitochondria... 30 1.7
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 30 1.7
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 30 1.7
At3g04470.1 68416.m00474 expressed protein 29 3.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 4.0
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 4.0
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 29 4.0
At1g15780.1 68414.m01893 expressed protein 29 4.0
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr... 28 5.2
At5g58280.1 68418.m07296 transcriptional factor B3 family protei... 28 6.9
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 28 6.9
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 28 6.9
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 28 6.9
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 6.9
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 6.9
At4g36980.1 68417.m05240 expressed protein 28 6.9
At1g05860.1 68414.m00613 expressed protein 28 6.9
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 27 9.2
At4g31880.1 68417.m04531 expressed protein 27 9.2
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 27 9.2
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 27 9.2
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p... 27 9.2
>At1g44780.1 68414.m05130 expressed protein ; expression supported
by MPSS
Length = 471
Score = 35.1 bits (77), Expect = 0.046
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 269 EAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 388
E+ D P ++ + EESN+ +E G +E+K V++K++ L
Sbjct: 418 ESESDEPEDSENEEESNEKAERGSQSEEKRMMVEKKAIEL 457
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 284 SPAENGDAEESNDASENGDATEKKET 361
S +E+GD+ E+N+ASE+GD E K T
Sbjct: 276 SESEDGDSVEANNASEDGDTVEDKNT 301
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEES-NDASENGDATEKKETGVKRKS 379
+K+GT+E+ + ENG EE+ SE + EKK+ G +S
Sbjct: 200 EKSGTEESEVEERKENGGTEENEKSGSEESEVEEKKDNGGTEES 243
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDAS--ENGDATEKKETGVKRKS 379
+K+G++E+ + +NG EES + S E + EKK+ G +S
Sbjct: 222 EKSGSEESEVEEKKDNGGTEESREKSGTEESEVEEKKDNGSSEES 266
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEES-NDASENGDATEKKETG 364
+K+GT+E+ + +NG EE+ +E + E+KE G
Sbjct: 178 EKSGTEESEVEERKDNGGTEENEKSGTEESEVEERKENG 216
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEES-NDASENGDATEKKETG 364
+K+GT+E+ + +NG EE+ +E + E+K+ G
Sbjct: 156 EKSGTEESEVEERKDNGGTEENEKSGTEESEVEERKDNG 194
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEES--NDASENGDATEKKETGVK 370
+K+GT+E+ + +NG +EES + EN E +E+ K
Sbjct: 245 EKSGTEESEVEEKKDNGSSEESEVEEKKENRGIDESEESKEK 286
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRK 376
Q+ + + +PA+N D+EE D S+ D E KE VK+K
Sbjct: 242 QRKPVSKKVKSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSV 382
+K +E +D+PAE+ DAE+ + E GD ++ + + KSV
Sbjct: 366 EKKNEEEESKDAPAES-DAEDEPEDDEGGDDSDSESKAEETKSV 408
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 269 EAPEDSPAENGDAEESNDASENGDATEKKETG 364
E +D P E+GD EE D E+ E+ E G
Sbjct: 60 EIGDDRPTEDGDEEEEEDEDEDDGGDEEDEEG 91
>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
PF05285: SDA1
Length = 698
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 391
+KN +DEA D E E+ +AS G +K G KRK V D
Sbjct: 493 EKNDSDEAETDWENE----EDEGEASVEGSGNREKAKGKKRKLVDFD 535
>At4g30930.1 68417.m04391 50S ribosomal protein L21, mitochondrial
(RPL21M) identical to SP|Q8L9A0 50S ribosomal protein
L21, mitochondrial precursor {Arabidopsis thaliana}
Length = 270
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 147 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNG-KRMVPMKPQKIRLLK 296
D E E+ + E + SPA+KVE AE G K M P+KP + RL K
Sbjct: 86 DDDEEEGEDFEDSADMEVEREYSPAEKVEEAEEIGYKVMGPLKPSE-RLFK 135
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 153 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKRMVPMKPQKIR 287
K V +EV + + + + PAKKV A++ KR + +K+R
Sbjct: 677 KPVTKDEVNAMKAQFKEINARPAKKVAEAKARKKRAAQKRLEKVR 721
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 135 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKRMVPMKPQK 281
DA +++ E + EP E P K + K A SN K P K ++
Sbjct: 1412 DATLEELEDVDRQDNGQEPLEEPEKPKSSNKKRRAASNPKARAPQKAKE 1460
>At3g04470.1 68416.m00474 expressed protein
Length = 423
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 254 KNGTDEAPEDSPAENGDAEESNDASEN-----GDATEKKETGVKRKSVALD 391
K G+ APED + G +++S+ S++ GDA + KE K+K VA D
Sbjct: 185 KKGSKSAPEDGN-QKGKSQKSSMVSDHANEDHGDAKKGKEKKKKKKGVAGD 234
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +3
Query: 150 KKEVAP---EEVTSTEPKESPVKKSPAKKVEAAE---SNGKRMVPMKPQK 281
KKE+ P EE + +P+ESP + P+ K E SN K P P++
Sbjct: 421 KKEINPPNLEEPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPESPKQ 470
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDATEKKE 358
++NG DE E EN E N++ E+G+ E
Sbjct: 209 EENGNDEENEKEDEENSMEENGNESEESGNEDHSME 244
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 251 QKNGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRK 376
+K +E +D+PAE+ EE+ D GD ++ + + K
Sbjct: 366 EKKREEEESKDAPAESDAEEEAEDDDNEGDDSDNESKSEETK 407
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 383 PQISSSHQSLSFLWHHRSQMHRCFLQHHHFQQANLLGLHRYHS 255
PQ+SS + S L H+S M R QH QQA+ G+H+ S
Sbjct: 304 PQLSSQQTTQSMLRQHQSSMLR---QHPQSQQAS--GIHQQQS 341
>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 634
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 359 SLSFLWHHRSQMHRCFLQHHHFQQANLLGLHRYHSF 252
SL F+W+ + Q L+ Q+ LLGL SF
Sbjct: 252 SLGFIWYRKKQRRLTMLRISDKQEEGLLGLGNLRSF 287
>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 273
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 284 SPAENGDAEESNDASENGDATEKKETGVKRKSVAL 388
+P+E + EE D E+GD E KR SV L
Sbjct: 234 TPSEEEEEEEDKDVEESGD-EEHSSRATKRSSVRL 267
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 123 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKRMVPMKPQKIRLLKMV 302
A A D+++VAP+E ++ + PV+ E E + ++ K +K RL +M
Sbjct: 38 AVARSAGSDEEDVAPDEAPVSDDEVVPVEDD----AEEDEEDEEKAEISKREKARLKEMQ 93
Query: 303 MLKK 314
+KK
Sbjct: 94 KMKK 97
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 123 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKRMVPMKPQKIRLLKMV 302
A A D+++VAP+E ++ + PV+ E E + ++ K +K RL +M
Sbjct: 38 AVARSAGSDEEDVAPDEAPVSDDEVVPVEDD----AEEDEEDEEKAEISKREKARLKEMQ 93
Query: 303 MLKK 314
+KK
Sbjct: 94 KMKK 97
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 243 SNGKRMVPMKPQKIRLLKMVMLKKATMHLRTVMPQKRKRLV 365
S G R++ + I L + VM+++ HL T +P KR+++V
Sbjct: 408 SKGTRLLELN---ILLNQTVMIRRLKQHLLTQLPPKRRQIV 445
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 302 DAEESNDASENGDATEKKETGVKRKS 379
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 302 DAEESNDASENGDATEKKETGVKRKS 379
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 266 DEAPEDSPAENGDAE-ESNDASENGDATEKKETGVKR 373
D+ +D E+ + E +SND+ + G T K+ G+KR
Sbjct: 188 DDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKR 224
>At1g05860.1 68414.m00613 expressed protein
Length = 280
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 341 HHRSQMHRCFLQHHHFQQANLLGLHRYHSF 252
H+ Q+ RC+ H+ +L HRY+S+
Sbjct: 77 HNLKQLSRCYRDHYWALMEDLKAQHRYYSW 106
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 278 EDSPAENGDAE--ESNDASENGDATEKKETGVKRKSV 382
E+ +NGD E + +D E+GD E++E V++KSV
Sbjct: 222 ENEQIDNGDQEIGDQDDYEEDGDEEEERE--VEKKSV 256
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 138 AAVDKKEVAPEEVTSTEPKESPVKKSPAK 224
A+ KKE + TS++ K PVK PAK
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAK 813
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 144 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKRMVPMKPQKIRLLKMVM 305
+ ++ V P T+T E+PV KVE +N +KP K + ++M++
Sbjct: 330 IGRRTVNPAAGTTTP--EAPVSVEEEMKVEEGRNNNPVWFSLKPSKTQNIEMLL 381
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 80 FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 166
FYSL F++ CNN +EGSC+
Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257
>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
protein similar to SP|Q12904 Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] {Homo sapiens}; contains
Pfam profile PF01588: Putative tRNA binding domain
Length = 389
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 144 VDKKEVAPEEVT-STEPKESPVKKSPAKKVEAAESNGKRMVPMKPQKIRLLKMVML 308
VDK +V P+ T TEP+E KK+ AK+ +A + K P +K L + +L
Sbjct: 179 VDKPDVQPQLGTKKTEPEEP--KKNAAKEKDAKKEKKKPAEPEPAKKEAELSVSLL 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,900
Number of Sequences: 28952
Number of extensions: 223863
Number of successful extensions: 965
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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