Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    29   0.77 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.1  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   4.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.2  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.5  
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28...    25   9.5  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/83 (21%), Positives = 27/83 (32%)
 Frame = -3

Query: 619 LVALFHFPTFVHFHSYTKQLINHRYYTFKSEETLIRQIKQNTQLHTSRSRQKVLWNCYL* 440
           L  +  F   +  ++  K L        K  +        N  +      ++V W CY+ 
Sbjct: 272 LTIMIQFCAHLSLYNLCKVLCGQMCLMVKDLDLHKEATNPNVDIEVDELNRRVFWTCYIF 331

Query: 439 HTLTGNFFNFSPI*KDSL*KCQL 371
            T T   F   P   D    CQL
Sbjct: 332 ETTTSLIFGTPPELGDLEIDCQL 354


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 580 ESAQMWENETKPLDVTSRDPTKKST 654
           +S  MW++   P ++TS++PT  ST
Sbjct: 75  KSGNMWDSLNAPSELTSKNPTVSST 99


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -3

Query: 631 EKLR-LVALFHFPTFVHFHSYTKQLINHRYYTFKSEETLIRQIKQNTQLHTSRSRQKVLW 455
           EK++ LV +  F + +  ++  K+L        K          ++     +   +++ W
Sbjct: 263 EKIQALVIMIQFASHLSLYNLCKKLCGQVCLMVKDLNLHKESTDKDLDQDMAELHRRIFW 322

Query: 454 NCYL*HTLTGNFFNFSPI*KDSL*KCQ 374
            CY+  T T   F   P+  D   +C+
Sbjct: 323 VCYIFETTTSLIFGTPPVLGDLEIECK 349


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 647 FFVGSREVTSSGFVSFSHICALSQLY*TVNKPP 549
           F  G R +  S  + F  IC L++ + + NKPP
Sbjct: 28  FSSGMRCLVRSADIQFKGICGLTRGFASFNKPP 60


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 396 KILYENVNLSNTGLLKDEKDNNSVYIFFL 310
           K LY N NLS   L+   K N + Y  FL
Sbjct: 34  KFLYTNKNLSQDSLVSKLKGNEAFYKPFL 62


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 123 RT*NRYDTFSPTHTTTLVTLVDS 191
           RT  R +TFSPT  TT+  +++S
Sbjct: 522 RTPIRSNTFSPTFDTTIYVVINS 544


>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 281 WKITRKKQ-KQKENVLKNLTSA 219
           W+I   +Q KQ+EN+LKN  SA
Sbjct: 53  WRIHEYRQEKQRENLLKNQFSA 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,979
Number of Sequences: 5004
Number of extensions: 45740
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)