Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0510 + 19846834-19848100,19848114-19848391                       35   0.065
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    35   0.065
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50...    28   7.5  
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    28   7.5  

>12_02_0510 + 19846834-19848100,19848114-19848391
          Length = 514

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 321 IFFLIKESLERRPMENYKKKTKAERKCVKKSDIRYFLILYRITENQ 184
           I +++ ++L+R P+EN   KTK + K  K   + Y + L  I +NQ
Sbjct: 26  ISYVVNKALDRLPLENEDLKTKLKSKLSKTQAMLYGITLQEIQDNQ 71


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 321 IFFLIKESLERRPMENYKKKTKAERKCVKKSDIRYFLILYRITENQ 184
           I +++ ++L+R P+EN   KTK + K  K   + Y + L  I +NQ
Sbjct: 117 ISYVVNKALDRLPLENEDLKTKLKSKLSKTQAMLYGITLQEIQDNQ 162


>07_01_0069 +
           505291-505327,505726-505956,506317-506652,507025-507372,
           507735-508594,508902-508971,509157-509371,509477-509537,
           509606-509715,510644-510694,510794-510916
          Length = 813

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 351 KDEKDNNSVYIFFLIKESLERRPMENYKKKTKAERKCVKKSDIR 220
           K  KDNNS     L + S+ER+  +N  ++ + +    ++S+++
Sbjct: 399 KGNKDNNSQLCSSLHESSIERKRRKNRDRRRRKKENANRRSNVQ 442


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 109 FCFENVRKIDTTHSLQLTQ 165
           F FE++RKI  THSL+ T+
Sbjct: 68  FFFEHIRKIGCTHSLERTE 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,583
Number of Sequences: 37544
Number of extensions: 246713
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)