Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)               31   0.82 
SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)         30   1.9  
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8280| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               29   3.3  
SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)                   29   4.4  
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               29   4.4  

>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
          Length = 601

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 204 YRITENQLT*LVLLCELERM--CRIDFTYVFKTKSISHLFSNGNTEPVAR 61
           Y  TE +   LV  CE  R+    I FT V   K ++H+F+N N++   R
Sbjct: 393 YSQTEREALALVWACEHFRLYLLGIQFTLVTDHKPLTHIFNNANSKSTPR 442


>SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)
          Length = 450

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -1

Query: 330 SVYIFFLIKESLERRPMENYKKKTKAER----KCVKKSDIRYFLILYR--ITENQLT 178
           S+Y   L K+ LE +   NYK+K+ AER    +C K   +   +  Y    TE  LT
Sbjct: 194 SIYTTILYKDELEVKEYNNYKQKSFAERLYVGRCKKDGSLDLLVASYHGANTETGLT 250


>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 653 VDFFVGSREVTSSGFVSFSHIC 588
           +D FVG REVT     S SHIC
Sbjct: 402 IDHFVGLREVTDPRQCSLSHIC 423


>SB_8280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 381 FHKESFHMGEKLKKFPVRVCYK*QFQRTFWRER 479
           FHK  +H G ++K+     C+  Q+   FW+ R
Sbjct: 9   FHKSPYHRGVRIKR--ALFCFTSQYDFVFWKRR 39


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 634 PEKLRLVALFHFPTFVHFHSYTKQLINHRYYTFKSEETLIRQIKQNTQ-LHTSRSRQKVL 458
           PE ++L  L     F+H  S+  + ++       S ET+ + I++ T  LH +++ + VL
Sbjct: 108 PEYVKLAKLQSTSQFIHSVSFVSKRVDSFCVLLYSRETIAQSIRRQTSFLHLAQTARPVL 167


>SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)
          Length = 817

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 384 HKESFHMGEKLKKFPVRVC 440
           +++  H+GEKL+KFP R C
Sbjct: 243 NQQDKHVGEKLQKFPTRKC 261


>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 559 INHRYYTFKSEETLIRQIKQNTQLHTSRSRQKVLWNCYL*HTLTGNFFNFSPI 401
           + H     K +E  I Q  +  + HTS++    + + Y   ++ GNF N +P+
Sbjct: 385 VEHLTTRLKFQEQEIAQAMEQRKKHTSKNSADEICSPYREPSIAGNFQNTTPV 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,597
Number of Sequences: 59808
Number of extensions: 314647
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)