Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    28   5.0  
AF077534-9|AAC26286.1|  194|Caenorhabditis elegans Hypothetical ...    28   6.7  
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 336 NNSVYIFFLIKESLERRPMENYKKKTKAERKC 241
           N+ V+I++ I+++  + P++N KKK    ++C
Sbjct: 105 NDFVFIYYCIQDNSYQLPVDNGKKKRLTAKEC 136


>AF077534-9|AAC26286.1|  194|Caenorhabditis elegans Hypothetical
           protein K07D4.2 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 351 KDEKDNNSVYIFFLIKESLERRPMENYKKKTKAERKCVKKS 229
           ++EK N  VY+   I  S++    E  KK+  A R  +++S
Sbjct: 151 REEKCNYGVYLLETIHRSIQTNGCETVKKEDVAPRAAIQQS 191


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 KKTKAERKCVKKSDIRYFLILYRITENQLT 178
           + T   R  VKK  +  F+I+YR+ EN ++
Sbjct: 125 RMTPMHRLYVKKQHLETFVIMYRVFENDIS 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,063
Number of Sequences: 27780
Number of extensions: 257640
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)