Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.21 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 619 LVALFHFPTFVHFHSYTKQLINHRYYTFKSEETLIRQ 509
           ++ ++ FP  V  ++YT  L+  R  + KSE+  IR+
Sbjct: 209 MIMMYWFPLVVIIYTYTSILLEIRRRSKKSEDDKIRR 245


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 323 YTLLLSFSSFKSPVLLKLTFS*RIFSYGGKVEKVSSQG 436
           Y +  +  SF  P+L+ L F  RI++      K  +QG
Sbjct: 247 YVVYSALGSFYIPMLVMLFFYWRIYNAAVSTTKAINQG 284


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 589 VHFHSYTKQLINH 551
           VHFH YT  ++ H
Sbjct: 194 VHFHDYTGSVVIH 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,823
Number of Sequences: 438
Number of extensions: 3459
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)