Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021165
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family pr...    31   0.88 
At3g47720.1 68416.m05199 expressed protein                             29   3.6  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   6.2  
At3g55630.3 68416.m06181 dihydrofolate synthetase/folylpolygluta...    27   8.2  
At3g55630.2 68416.m06180 dihydrofolate synthetase/folylpolygluta...    27   8.2  
At3g55630.1 68416.m06179 dihydrofolate synthetase/folylpolygluta...    27   8.2  

>At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 Helix-loop-helix
           DNA-binding domain
          Length = 414

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 381 NVNLSNTGLLKDEKDNNSVYIFFLIKESLERRPMENYKKKTKAERKCVKKS 229
           NV L       D+ DNNSV + F+  E  +R      KK+ K++RK  + S
Sbjct: 136 NVFLEEKEDQDDDNDNNSVQLRFIGGEEEDRENKNVTKKEVKSKRKRARTS 186


>At3g47720.1 68416.m05199 expressed protein
          Length = 316

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 535 KSEETLIRQIKQNTQLHTSRSRQKVLWNCYL*HTLTGNFFNFSPI*KD 392
           K+EET I + + +T    SRS +++  +C   H+   N F  + + KD
Sbjct: 5   KTEETPINEEQGSTNSSESRSNEELFSDCDQQHSSIANEFGLTELPKD 52


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 568  KQLINHRYYTFKSEETLIRQIKQNTQLHTSRSRQKVLWN 452
            ++LINH+ ++F++      ++K +  L    SRQK+  N
Sbjct: 1897 RRLINHQRFSFQNPRCTDPRVKTSALLQAHFSRQKISGN 1935


>At3g55630.3 68416.m06181 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 492

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 514 RQIKQNTQLHTSRSRQKVLWNC 449
           +QIKQN + +  RS Q +L+NC
Sbjct: 340 KQIKQNQERNQKRSEQILLFNC 361


>At3g55630.2 68416.m06180 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 491

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 514 RQIKQNTQLHTSRSRQKVLWNC 449
           +QIKQN + +  RS Q +L+NC
Sbjct: 339 KQIKQNQERNQKRSEQILLFNC 360


>At3g55630.1 68416.m06179 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 470

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 514 RQIKQNTQLHTSRSRQKVLWNC 449
           +QIKQN + +  RS Q +L+NC
Sbjct: 318 KQIKQNQERNQKRSEQILLFNC 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,774
Number of Sequences: 28952
Number of extensions: 226203
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)