Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021164
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 102 5e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 55 8e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 44 3e-05
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 40 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 33 0.047
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.33
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.33
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.77
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 3.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 102 bits (244), Expect = 5e-23
Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 AAVSKTAVAFIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 433
AAVSKTA A IERVKLL+Q Q + + RYKGI + F R E+G++S WRGN AN
Sbjct: 38 AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97
Query: 434 VIRYFPTQALNFAFKDKYKQVF 499
V+RYFPTQALNFAFKDK+K++F
Sbjct: 98 VLRYFPTQALNFAFKDKFKKMF 119
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 326 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 505
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 506 G 508
G
Sbjct: 226 G 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 55.2 bits (127), Expect = 8e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +2
Query: 257 AAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A VS+TAV+ +ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N
Sbjct: 31 ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83
Query: 437 IRYFPTQALNFAFKDKYKQ 493
+R FP A+ FA + KQ
Sbjct: 84 LRAFPYGAVQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 469
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +2
Query: 263 VSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
V+K+ VA ++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 443 YFPTQALNFAFKDKYKQVFL 502
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +2
Query: 251 YPAAVSKTAVAFIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRG 421
+P + AVA I V L L V Q++ + Y G D +I K +G +RG
Sbjct: 8 FPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRG 67
Query: 422 NFANVIRYFPTQALNFAFKDKYKQVFLGGLTRRRSSGVTSLV 547
++ P +AL FA D Y +++ R+ SS S++
Sbjct: 68 ILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 350 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 490
+Y G VD F +I K++ +L+ + G A + R+ A F K +
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIR 186
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +2
Query: 272 TAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 451
T V + ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 452 TQALNFAFKDKYKQ 493
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 260 AVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANV 436
+V++ + ++ +K +Q +S+ Q K I+ + + + K G+ ++RG +
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGI 295
Query: 437 IRYFPTQALNFAFKDKYKQVFLGGLTRR 520
+ FP A + + K+ ++G L R
Sbjct: 296 LGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 326 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 469
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 329 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 496
+ ++A + YK + +I + GLL FW G + R + + F +K ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 338 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 378 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMNATAV 271
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 74 YEITPNLLFKNQELVFRDPPSACAATPTSTY 166
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 362 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 454
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 494 VFLGGLTRRRSSGVTSLVIWPPVVPPEPT 580
+F GG+ + R G +S PP P PT
Sbjct: 104 LFAGGMPKLRHIGKSSASAAPPSAPAPPT 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,909
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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