Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021163
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 41 2e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 8e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.004
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.017
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.053
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.070
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.093
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.21
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.21
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.28
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.28
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.38
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 30 0.38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.50
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.50
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.66
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.87
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.87
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 28 1.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.6
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.5
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 3.5
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 4.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 4.6
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 6.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 26 6.1
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 8.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.1
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 8.1
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 40.7 bits (91), Expect = 2e-04
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + A
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDA 50
Score = 39.9 bits (89), Expect = 4e-04
Identities = 12/51 (23%), Positives = 30/51 (58%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAI 505
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIV 54
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG L+ +TT+ LR FE++G V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G L +T +R+ F++FG V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 245 TNKWPRTIQNLNGELVH--GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 418
T K P+ + + + H G+ I + A R+ T K+FVG + E R F
Sbjct: 210 TFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-TAKMFVGGVPGDCTEEEFRNFFN 268
Query: 419 KFGTVVECDIV 451
+FG V++ ++
Sbjct: 269 QFGRVLDATLM 279
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +2
Query: 260 RTIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 436
+ + LN L+ G+ +I + + T +F+ NL + + F FG ++
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195
Query: 437 ECDIV-------RNYGFVHLDATGDVNDAIK 508
C + + YGFVH D+ N AI+
Sbjct: 196 SCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIEAAKSRKAPSTPT-------TKIFVGNLTDKTRAPEVRELFQKF 424
I+++NG L++ + + + SR+ + T +++ NL + E +LF +F
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF 284
Query: 425 GTVVECDIVRN 457
G + +V++
Sbjct: 285 GEITSLSLVKD 295
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
+FI NL D+ + L+ F +GT+ I+
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Frame = +2
Query: 281 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 433
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 434 VECDIV--RNYGFVHLDATGDVNDAIK 508
I+ +N FVH ++ DAIK
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIK 349
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMEN 246
+FIGNL E ++ F K+G + I+ +N FVH N
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLN 343
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 70 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 243
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 244 NEQVA 258
N Q A
Sbjct: 347 NRQSA 351
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFV 469
T + +FVG L+ E++ LFQ FG +V I + GFV
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFV 343
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTV 198
F++F+G LS T ++++R LFE GTV
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTV 70
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 245 TNKWPRTIQNLNGELVHGQAIKIEAAKSRK-APSTPTTKIFVGNLTDKTRAPEVRELFQK 421
T P T+Q+ E A+ A +S A ++FVG L+ T+ E+R LF+
Sbjct: 8 TQNAPNTVQD-QVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFET 66
Query: 422 FGTV 433
GTV
Sbjct: 67 VGTV 70
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.053
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 475
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVA 258
+F+G ++ E LR +FE++G+V + NY GF+ M A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAA 454
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.070
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +1
Query: 103 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVA 258
P + IF+G L T L LF KYG V++C I+ + F+ +++Q A
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAA 417
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.093
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 472
+F+GNL + E+RE + FG + + IV RN FVH
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVH 247
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 418
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 419 KFGTVVECDIVR--NYGFVHLDATGDVNDAI 505
+FG + + R N FV+ + +AI
Sbjct: 436 EFGEIEYVNFFREKNCAFVNFTSLASAINAI 466
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVAAN 264
G + I+IGN D T L+ FE++G + + R N FV+ + A N
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAIN 464
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 299 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 121 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVH-MENEQVA 258
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV NE A
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCA 411
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNA 416
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.21
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
F++F+GNL + + L F +Y ++V+ +VR+
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
P +FV L T+ ++ +F +FG ++ C ++R+
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRD 278
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 365 VGNLTDKTRAPEVRELFQKFGTV 433
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +2
Query: 341 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 481
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 482 TGDVNDAIKS 511
+ AI +
Sbjct: 472 PFEAVQAINT 481
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 302 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 427
A++ + K++++ I+VGNL ++ ++ ELF+ FG
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFG 44
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYG 192
I++GNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
+FV + + + E++++F KFGTV I+R
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMR 134
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
T +F+G LS + L FE+YGT+V ++ + YG+V E + A
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
++++GNLS + +L+ + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRP----LFEKYGTVVE 204
+++ NL+DK + DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTV 198
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 433
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
+F+ LS T E+D+ F +YG + +VRN
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVAANHSE 273
+FI NLS K T ++ LF +YG V + + R FV EN Q A E
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACE 68
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
+F+ L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTV 198
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 688 SIAETVAVGAQRFGHSFGPVAPRGHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRST 509
S A V +G+ GH+ G V G SGS + P + S + + A + ST
Sbjct: 63 STAAGVGIGSA-IGHTVGSVITGGFSGSGSNNAPADTSVPQSSYSNSVPEAAYGSAPPST 121
Query: 508 FDS 500
F S
Sbjct: 122 FAS 124
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 604 CYRCGRGGPLVQRSARSAGPRPQRFPR 684
CYRCG+ G +Q +A P PR
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPR 211
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 625 PRGHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRSTFDSV 497
P S +T P +G SSTT+ S A P+++ +DS+
Sbjct: 624 PTVMSAATTSRAPSGTTSGTASSTTSSSVASATPTHKHWWDSI 666
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 625 PRGHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRSTFDSV 497
P S +T P +G SSTT+ S A P+++ +DS+
Sbjct: 624 PTVMSAATTSRAPSGTTSGTASSTTSSSVASATPTHKHWWDSI 666
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 608 TAVAAGGHWSKGVPEALGPDRNGF 679
T GGHW G+ A D+NGF
Sbjct: 372 TGQFCGGHWENGIKRAY-LDKNGF 394
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 579 PLPDTTRRQLHLHG-LSVDHHTVQL 508
PLPD T R+LHL+ L H++ L
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSL 657
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTV 198
+ +FI N+ + +E D++ LF++Y +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 263 TIQNLNGELVHGQAIKIEAAKSRKAPSTPTTK 358
T QNL LV GQ IK K + S TTK
Sbjct: 15 TKQNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 547 PSWAVRRPSYRSTFDSVVH 491
PSW V P + +T+D VV+
Sbjct: 207 PSWTVEEPVHYNTYDGVVN 225
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 436 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 341
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTV 433
PT ++VGNL A V F +GTV
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTV 613
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 208 DIVRNYGFVHMENEQVAANHSES*RRVSSWAGDQNRSGQEPEGAVDANH*NIRG*F 375
DI NY F NE A + RV++W+ + P+GA H N+ G F
Sbjct: 207 DISENYTFDAPANELYATFLDPA--RVAAWSRAPPQLDVRPQGAFSLFHGNVVGKF 260
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 592 DPEQ---CYRCGRGGPLVQRSARSAGPR 666
+P+Q CY CG G LV+ S PR
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNPR 80
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 568 VRQRPGMGDPEQ---CYRCGRGGPLVQRSARSAG 660
VR P +P Q CY+CGR G + R R+ G
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGH-IARDCRTNG 102
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +1
Query: 535 QPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGPLVQRSARSAGPRPQRFPRSSVRPR 702
QPM Q T Q PGM P R G + QR+ PQR + P+
Sbjct: 566 QPMMPQ-RTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQ 620
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 8.1
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Frame = +2
Query: 65 CYSLYIVTHNLKCRAPVL-SKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTW 241
C SLY +H+ + R PV+ ++ + L+ Q + S N + ++ S S +
Sbjct: 4 CQSLYKFSHSFRKRIPVMFQRAQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRS- 62
Query: 242 KTNKWPRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP--EVRELF 415
TN +T + + L I + A + R A S VG K P E L
Sbjct: 63 STNDDQQTFSSQSDNL-PSSPITLPAKRGRSAASLKQLDNTVGFDVSKPSLPVFENSGLG 121
Query: 416 QKFGTVV 436
K+ T +
Sbjct: 122 SKYSTEI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,324
Number of Sequences: 5004
Number of extensions: 63253
Number of successful extensions: 302
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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