Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021163
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   8.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 74  LYIVTHNLKCRAPVLSKSSSGTFLIK 151
           ++I TH L C+  +  K+ S  +L++
Sbjct: 34  MHIRTHTLPCKCHLCGKAFSRPWLLQ 59


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 511 LNGMMVDGQPMKVQLSTSR 567
           LNG+   G+P  +QL + R
Sbjct: 318 LNGLEFAGRPQNLQLQSQR 336


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 32  LVFIFLTCVIYCYSLYIVTHNLKC 103
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 32  LVFIFLTCVIYCYSLYIVTHNLKC 103
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 577  AAGHDSSTTAPSWAVRRPSYRSTFDSVVHIARRVQMHE 464
            ++G DS ++  SW     S +     +V   + V +HE
Sbjct: 1068 SSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVMIHE 1105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,546
Number of Sequences: 438
Number of extensions: 4616
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)