Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021163
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 45 4e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 45 4e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 45 6e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 43 2e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 42 4e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 42 4e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 4e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 5e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 7e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 7e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 7e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 41 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 41 0.001
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 40 0.001
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 40 0.001
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 39 0.003
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.005
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.007
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.007
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.015
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.020
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 36 0.020
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 36 0.020
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.020
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.020
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.020
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.020
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.027
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.027
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 36 0.027
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.027
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.027
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.027
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.035
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 35 0.046
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.046
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.046
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.046
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.046
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.046
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.061
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.061
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.061
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.061
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.061
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.061
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 34 0.081
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 34 0.081
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.081
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 34 0.081
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 34 0.081
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.11
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 34 0.11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 34 0.11
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 34 0.11
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.11
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.11
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.11
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 34 0.11
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.14
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.14
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.19
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.19
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.19
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.19
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.19
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.19
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.19
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.19
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.19
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.25
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 33 0.25
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.25
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.25
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.25
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 33 0.25
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 33 0.25
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.25
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.25
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 33 0.25
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 32 0.33
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.33
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.33
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 32 0.33
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.43
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 32 0.43
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.43
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 32 0.43
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.43
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.43
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.43
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.43
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.57
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 31 0.57
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.57
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.57
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.57
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.57
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 31 0.75
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 0.75
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 0.75
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 0.75
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.75
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.75
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.75
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.75
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.75
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.75
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.75
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 31 1.00
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 1.00
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 30 1.3
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 30 1.3
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.3
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 1.3
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 30 1.7
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 30 1.7
At5g19340.1 68418.m02305 expressed protein 29 2.3
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 2.3
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 2.3
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.0
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 3.0
At4g01070.1 68417.m00145 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0
At3g13460.2 68416.m01694 expressed protein contains Pfam profile... 29 3.0
At3g13460.1 68416.m01693 expressed protein contains Pfam profile... 29 3.0
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 3.0
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 3.0
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 29 3.0
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 3.0
At5g48240.1 68418.m05960 hypothetical protein 29 4.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 4.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 4.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 4.0
At4g30960.1 68417.m04395 CBL-interacting protein kinase 6 (CIPK6... 29 4.0
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 4.0
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 4.0
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 29 4.0
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 5.3
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 5.3
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 28 5.3
At1g26780.1 68414.m03260 myb family transcription factor (MYB117... 28 5.3
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 7.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 28 7.0
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 7.0
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 7.0
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 28 7.0
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 9.3
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 27 9.3
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 27 9.3
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 27 9.3
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 27 9.3
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 27 9.3
At3g56570.1 68416.m06290 SET domain-containing protein low simil... 27 9.3
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 27 9.3
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 27 9.3
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 27 9.3
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 9.3
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 9.3
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ A
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDA 48
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 508
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVAANHSES*RR 285
T +F+ N +T E D+ FE YG V I RN+ FV E ++ A E+ +R
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQR 149
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDA 502
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + A
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDA 57
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 601 QCYRCGRGGPLVQRSARSAGPRPQR----FPRSSVRPRS 705
+CYRCG G + + S P+ R + RS V+ RS
Sbjct: 122 KCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRS 160
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDA 502
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 234
G ++++G LS +T DL LF +YG V + D+ R+Y FV
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 109 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
T KIF+GNL+ +TT DLR FE++G VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 508
++VGN TR ++ LF KFG V D+ Y FV+ + D DAI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+++GN T +DL LF K+G V D+ Y FV+ E+E+ A
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDA 48
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 347 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
PT +FV N +TR ++ F+ +G V+ + RN+ FV D A+ S
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 148
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 115 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVAANHSES 276
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ A +S
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 148
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F GN E+DL LF KYG V D+ + FV+ME+E+ A
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
+F GN R ++ LF+K+G V D+ + FV+++ D DAI++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRA 54
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 124 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F+ N + T DL FE YG +V I RN+ F+ E ++ A
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F GN E+DL LF KYG V D+ + FV+ME+E+ A
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
+F GN R ++ LF+K+G V D+ + FV+++ D DAI++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRA 54
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 124 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F+ N + T DL FE YG +V I RN+ F+ E ++ A
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVA 258
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E A
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAA 165
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 442
I+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 443 DIV-------RNYGFVHLDATGDVNDAIKS 511
+ R YGFV + + AI++
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F GN E DL LF KYG V D+ + FV+ME+E+ A
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
+F GN R ++ LF+K+G V D+ + FV+++ D DAI++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRA 54
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 124 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 144
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 213
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 213
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 213
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 255
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 275 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 455 NY 460
++
Sbjct: 143 DH 144
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 255
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 275 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 455 NY 460
++
Sbjct: 143 DH 144
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVA 258
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDA 58
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVA 258
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDA 58
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +2
Query: 245 TNKWPRTIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQK 421
T+ + +Q LN ++G+ I+I +++ A + +FV NL + E F
Sbjct: 97 TDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSG 156
Query: 422 FGTVVECDIV-------RNYGFVHLDATGDVNDAIK 508
GT+V C + R YGFV D +AI+
Sbjct: 157 CGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE 192
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVAANHSES 276
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + AA E+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Score = 35.1 bits (77), Expect = 0.046
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
++V NL D ++RELF +FGT+ C ++R+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = +1
Query: 64 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 222
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 223 YGFVHMENEQVAANHSE 273
YGFV + E A N E
Sbjct: 176 YGFVQFDTEDSAKNAIE 192
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGT 430
I NL+G G+A+K+ A K K P P T K+FVGNL+ + + F++ G
Sbjct: 143 IDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 431 VVECDIV--------RNYGFVHLDATGDVNDAIKS 511
VV +V R YGFV + ++ A++S
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 234
K+F+GNLS T L F + G VV +V R YGFV
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 34 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 213
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 214 VRN--------YGFVHMENEQ 252
VR+ YGFV E E+
Sbjct: 96 VRHIVTGASRGYGFVEYETEK 116
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 332 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
KA P +FVG L+ T +RE+ K+G + +VR+
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +2
Query: 272 NLNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 445
+LNG L+ ++ +AP P +++VGNL + +LF + G VVE
Sbjct: 215 DLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274
Query: 446 IV--------RNYGFVHLDATGDVNDAIKS 511
+V R +GFV + ++N+AI +
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 246
F++++GNL L LF ++G VVE +V R +GFV M +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIK 508
K+FVGNL + + LF++ GTV E D R +GFV + + + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+F+GNL+ L LFE+ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 505
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAI 62
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVA 258
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDA 58
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +1
Query: 109 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 329 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +1
Query: 109 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 329 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E L+ F KYG +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 496
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T ++E F K+G +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = +2
Query: 365 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVAANHSES 276
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN AA ES
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 305 IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
++ E A ++ ++V NL +++E+F FGTV ++R+
Sbjct: 116 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 166
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 219
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 219
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 103 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 481
T KIFVG L + + F++FGT + ++ R +GF+ D+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 103 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 481
T KIFVG L + + F++FGT + ++ R +GF+ D+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVAAN 264
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+N
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
++KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 506 K 508
+
Sbjct: 93 Q 93
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIK 508
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIK 63
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 100 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 213
M G + I++GNL E ++ +F KYG +V+ ++
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
+IF+G LS TE L F++YG + EC I+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +2
Query: 323 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 478
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 479 ATGDVNDAIK 508
+DAIK
Sbjct: 62 DRRGADDAIK 71
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
+IF+G LS TE L F++YG + EC I+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +2
Query: 323 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 478
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 479 ATGDVNDAIK 508
+DAIK
Sbjct: 62 DRRGADDAIK 71
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQ 252
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 460
P +FV L T ++ +F +FGTVV D++R++
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDF 278
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.035
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
+IF+G LS + T+ DL F ++G +++C I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
++IFVG L+ + ++ F +FG +++C I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 35.1 bits (77), Expect = 0.046
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
++++GNLS TT+ LR F YG VV+ ++R+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TKIFVG L +T+ +R F++FG +VE ++
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.046
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 61 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 219
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 220 NYGFVHMENEQVA 258
YGFV E E+ A
Sbjct: 173 GYGFVQFEKEETA 185
Score = 31.9 bits (69), Expect = 0.43
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Frame = +2
Query: 260 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGT 430
R +++LN + + I+I S + PST + +F+ NL + E F FGT
Sbjct: 100 RAMESLNYAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 157
Query: 431 VVEC----DIV---RNYGFVHLDATGDVNDAI 505
++ C D+V + YGFV + AI
Sbjct: 158 ILSCKVAMDVVGRSKGYGFVQFEKEETAQAAI 189
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSE 171
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 326 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 481
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 482 TGDVNDAIKS 511
V ++S
Sbjct: 171 EDSVEVVMQS 180
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 225
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 496
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 225
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 496
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 225
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 496
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
++ FIG L+ T++ LR FEKYG +VE +V
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVV 39
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 502
P + F+G L T +R+ F+K+G +VE +V R +GF+ D +++A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 503 I 505
I
Sbjct: 65 I 65
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 82 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
S+P S G T K+++ LS +TTE LR FE++G ++ ++V
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +2
Query: 260 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 439
R +++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++
Sbjct: 46 RRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIH 105
Query: 440 CDIV 451
++V
Sbjct: 106 MNMV 109
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.7 bits (76), Expect = 0.061
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 499
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 500 AIKS 511
A+++
Sbjct: 93 AMQA 96
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 34.3 bits (75), Expect = 0.081
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
F+I++GNL L LF ++G VV+ +V R +GFV M NE
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Frame = +2
Query: 212 SSEITVSCTWKTNKWPRTIQNLNGELVHGQAIKI-EAAKSRKA---PSTPT-TKIFVGNL 376
+S V+ +T+ W + +G + G ++ + E+ +S P P K+FVGNL
Sbjct: 62 NSSPVVTFVSQTSNWAEEEEGEDGS-IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNL 120
Query: 377 TDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
+ + LF++ GTV +++ R +GFV + + A++
Sbjct: 121 PYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+F+GNL L LFE+ GTV +++ N
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYN 147
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 34.3 bits (75), Expect = 0.081
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 505
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 506 KS 511
KS
Sbjct: 66 KS 67
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.081
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVAANHS 270
+++G+L+ +TTE+DL LF +YG + + + GF H+E E VAA +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVE-EAVAAKEA 72
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 475
+ ++VG+LT +T ++ ELF ++G + + + GF +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI 58
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 34.3 bits (75), Expect = 0.081
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Frame = +1
Query: 106 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + + A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T E+R F +FG ++E I+
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
K+FIG LS TTE L F K G VVE IV
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
+K+F+G L+ T + E F K G VVE IV
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 124 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVA 258
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 103
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 506 K 508
K
Sbjct: 94 K 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 506 K 508
K
Sbjct: 94 K 94
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVE 204
K+++ +S TE D+R +FEKYG V E
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTE 138
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 100 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
M T K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 100 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
M T K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 338 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 472
PST ++VGN+ + P ++E+F G V C ++R +YGFVH
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVH 97
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 481
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +1
Query: 61 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 219
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 220 NYGFVHMENEQVA 258
YGFV E E+ A
Sbjct: 177 GYGFVQFEKEESA 189
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Frame = +2
Query: 260 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGT 430
R ++ LN + + I+I S + PST + IF+ NL + E F FGT
Sbjct: 104 RAMEALNYTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 431 VVECDIV-------RNYGFVHLDATGDVNDAI 505
++ C + + YGFV + AI
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAI 193
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 278 NGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 448
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E I
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI 161
Query: 449 VRNY 460
+R++
Sbjct: 162 MRDH 165
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
KIF+G L+ +TT A+ F KYG + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
KIFVG L +T + E + F K+G + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE 161
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +2
Query: 308 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 463
++E K S +++VGNL + E+ ++F + GTVV+ IV R +G
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 464 FVHLDATGDVNDAIK 508
FV + + + +A++
Sbjct: 161 FVTMGSIEEAKEAMQ 175
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 240
++++GNL T ++L +F + GTVV+ IV R +GFV M
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 228
+++G + TE DL +F +YG +V+ +++R+ G
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKG 72
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVAAN 264
G ++++GNL +E DLR +FE +G+V E + + +GFV + A N
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAI 505
+++VGNL ++R++F+ FG+V E + + +GFV D +A+
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 219
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
P K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 219
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVAAN 264
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + A++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
++K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 506 KS 511
++
Sbjct: 99 QA 100
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +1
Query: 103 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 92
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +1
Query: 103 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +1
Query: 103 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
F+IF+G+L +E DL+ +F G V E I++N
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKN 248
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -3
Query: 702 SRPNARSRKPLRSGPSASGT----PLDQWPPAATAVALLGVAHARPLPDTTR 559
S A SR P S ASG+ P PP A A L A ARP+P R
Sbjct: 515 SARGAGSRAPSSSAKRASGSRGRRPRPPLPPPARARPLPPPARARPMPPPAR 566
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +2
Query: 98 KCRAPVLSKSSSGT---FLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKWPRTI 268
+C + +S + T +K Q + DR N V NA ITV C P+ +
Sbjct: 509 QCHFGLFQESPTATDQELALKFQWSVADRSLSNFVPILNATKENITVKCC-AGKGIPKVV 567
Query: 269 Q-NLNGELVHGQAIKIEA 319
LNGELV G IK +A
Sbjct: 568 SLELNGELVEGNIIKGQA 585
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIK 508
++++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIR 56
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKS 511
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI +
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKS 511
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI +
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISA 57
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Frame = +1
Query: 106 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + + A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKS 511
++++VGNL + E+ + F+ FG V + R Y F+ + D DAI++
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRA 57
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 469
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 470 HLDATGDVNDA 502
+ +V A
Sbjct: 146 TMSTAAEVEAA 156
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 240
K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKS 511
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI S
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQ 301
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 469
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 470 HLDATGDVNDA 502
+ +V A
Sbjct: 146 TMSTAAEVEAA 156
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 240
K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKS 511
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQ 309
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKS 511
+++VGNL+ + LF + G VVE ++ + +GFV D++ +V +AIKS
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVAA 261
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 262 NHSES 276
N +S
Sbjct: 260 NAIKS 264
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +1
Query: 73 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 228
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 229 FVHMEN 246
FV M +
Sbjct: 136 FVTMSS 141
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 469
+ A ++ + K+FVGNL + ++ +LF+ G V +++ R +GFV
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 470 HLDATGDVNDA 502
+ + +V A
Sbjct: 138 TMSSVSEVEAA 148
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 97 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 225
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 130 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVA 258
+ NLS T LR LF GTVV+C I ++ ++ N + A
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEA 399
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 365 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 478
V NL+ ++R+LF GTVV+C I + +++
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 338 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 472
PST ++VGN+ + P ++E+F G V ++R +YGFVH
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVH 102
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = +2
Query: 365 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAI 505
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
IF+ L TT +L+ FE YG + EC +V
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVV 195
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 118 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 249
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 362 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 478
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 329 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 439
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 329 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 439
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
E+ + + P+T +FV L+ +T + +R F +FG V + +V
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +2
Query: 341 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 496
++P++K+F+G L+ +++ F FG V E I R +GFV GD
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 497 DA 502
A
Sbjct: 97 SA 98
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 347 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS 511
PT +FV N +TR ++ F+ +G V+ + RN+ FV D A+ S
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 122
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 115 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVAANHSES 276
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ A +S
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 122
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
T KIF+G L T + R FE YG V + I+ R +GFV ++E
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSE 161
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 454
K+F+G ++ T +RE F FG V++ ++R
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
IF+ TT+ +L+ FE YG + EC +V + YGFV + + A
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGA 462
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 0.57
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 PRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 436
P T + NG G + A +R T T IFVG L ++++ F +FG +V
Sbjct: 275 PATPRKTNGYQQQGGYMP-SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIV 333
Query: 437 ECDIV--RNYGFVHLDATGDVNDAIK 508
I + GFV + +A++
Sbjct: 334 SVKIPVGKGCGFVQFVNRPNAEEALE 359
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMEN 246
IF+G L T+ DL+ F ++G +V I + GFV N
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVN 350
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 350 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 505
+TK+++G L+ T +++ F F V E ++ R YGFV+ + N AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 506 KS 511
+
Sbjct: 90 SA 91
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIK 508
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A++
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQ 185
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Frame = +2
Query: 323 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 472
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 473 LDATGDVNDAIKS 511
++ D A+++
Sbjct: 106 FNSKEDAQSAVEA 118
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Frame = +2
Query: 323 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 472
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 473 LDATGDVNDAIKS 511
++ D A+++
Sbjct: 125 FNSKEDAQSAVEA 137
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Frame = +2
Query: 296 GQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVECD 445
G+ +K++ AK++K PS PT +FV NL + RA ++E F G VV +
Sbjct: 161 GRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTE 220
Query: 446 IV 451
++
Sbjct: 221 VI 222
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHME 243
++ N+ +T D+R LFEKYG+V++ ++ RN G V +E
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIE 140
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.1 bits (67), Expect = 0.75
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 445
I+ LN +HG+ I++ A K +F+GNL + + F FG +
Sbjct: 83 IKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNP 142
Query: 446 IV---------RNYGFVHLDATGDVNDAIKS*TV*WSTDSP*RCSCRRVVSGSGRAWATP 598
+ R +GF+ D+ + AI+S T + ++ S G TP
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTP 202
Query: 599 SSATAVAAGGHWSKGVPEAL 658
+ A K P L
Sbjct: 203 AERLLAATNPTAQKSRPHTL 222
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 359 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
++V NL D ++ ELF +FGT+ C ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.1 bits (67), Expect = 0.75
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKS 511
K++VGNL T+ +R F KFGT+V ++ RN F L T G+ DA S
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
K+++GNL T LR F K+GT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
+++V N+ ++ ++FQ FGTV+ ++ RN
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRN 142
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 260 RTIQNLNGELVHGQAIKIEAAKSRKAPST 346
+ ++ LNG++V+G+ I +E AK +AP+T
Sbjct: 122 KALKALNGKIVNGRLIFVETAKEVEAPTT 150
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMEN 246
IF+G L T+ DL+ F ++G +V I + GFV N
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVN 348
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 PRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 436
P T + NG G + +R T IFVG L ++++ F +FG +V
Sbjct: 273 PATPRKTNGYQQQGGYMP-NGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIV 331
Query: 437 ECDIV--RNYGFVHLDATGDVNDAIK 508
I + GFV + +A++
Sbjct: 332 SVKIPVGKGCGFVQFVNRPNAEEALE 357
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +2
Query: 305 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 457
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVA 258
++IG + E ++ F ++GTV + RN +GF+ E+ +VA
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVA 258
IF+G + TE DL+ +F ++G +V I + GFV N A
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 242 KTNKWPRTIQNLN-GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 418
K NK P+ + N E V + I++ + P K++VG + ++ E+R F+
Sbjct: 124 KVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPN-KLYVGGIPYQSTEDEIRSYFR 182
Query: 419 KFGTVVECD 445
G +++ D
Sbjct: 183 SCGVIIKVD 191
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLF 180
G +++IGNL+ TTE D+R LF
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLF 282
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
KIF+ L +TT L +FE YG + EC +V
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
KIF+ L +TT L +FE YG + EC +V
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 347 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 472
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVAA 261
+++GNLS + T+ DL LF G + E + R+ +GFV AA
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 324
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 347 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 472
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVAA 261
+++GNLS + T+ DL LF G + E + R+ +GFV AA
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 320
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TKI+VG L TR + F++FG ++ ++V
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVV 45
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGF 466
HG + ST T IFVG + ++R+ F +FG VV I + GF
Sbjct: 302 HGSNGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGF 360
Query: 467 VHLDATGDVNDAIKS 511
V DAI+S
Sbjct: 361 VQFADRKSAEDAIES 375
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVAANHSES 276
IF+G + + DLR F ++G VV I + GFV + + A + ES
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIES 375
>At5g19340.1 68418.m02305 expressed protein
Length = 263
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 142 SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVAANHSES*RRVSSWAGDQNRSG 321
S+K L+P E + +V GFVH + ++ N++ + SW D + S
Sbjct: 92 SEKLKNVTLKPKVEVQQEEEDHKVVNEEGFVHNKEQENNNNNNNNNNNRGSWFLDDDPSP 151
Query: 322 QEPEGAV 342
+ P+ V
Sbjct: 152 RPPKCTV 158
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 502
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 503 IKS 511
I+S
Sbjct: 103 IRS 105
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 502
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 503 IKS 511
I+S
Sbjct: 133 IRS 135
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 314 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 460
E SR S+ + + + NL R ++R+ F++FG + + + RNY
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV 198
G K+++GNL +E LR +FE +G V
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPV 291
>At4g01070.1 68417.m00145 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 624 PAATAVALLGVAHARPLPDTTRRQLHLHGLSV 529
P + G+ H PL + +R +HLHGL+V
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTV 38
>At3g13460.2 68416.m01694 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 664
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 619 GHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRS 512
G GST R ++G+DS T WA YRS
Sbjct: 322 GQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRS 357
>At3g13460.1 68416.m01693 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 667
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 619 GHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRS 512
G GST R ++G+DS T WA YRS
Sbjct: 325 GQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRS 360
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 252
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 79 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 234
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 235 HMENEQVA 258
+ VA
Sbjct: 113 TFADSAVA 120
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 115 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 249
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 311 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVA 258
+F+G L T+ L+ +F +YG +V I + GFV + A
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCA 309
>At5g48240.1 68418.m05960 hypothetical protein
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 607 STARGRPCPAAAGHDSSTTAPSWAVRRPSY 518
S +G P A A H S AP WA R +Y
Sbjct: 277 SIEKGSPSVARAAHKSEDEAPVWAPLRDNY 306
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 112 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g30960.1 68417.m04395 CBL-interacting protein kinase 6 (CIPK6)
identical to CBL-interacting protein kinase 6
[Arabidopsis thaliana] gi|9280634|gb|AAF86505
Length = 441
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 707 RDRGRTLDRGNRCGRG--PALRALLWTSGP 624
+D G TL+ N C PAL+ + WTS P
Sbjct: 411 KDHGDTLEYNNFCSTALRPALKDIFWTSTP 440
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 46 FNLCYILLFFVHSNP*SKMPGTG-TFKIF 129
F LCYI+LF +H++ +KM G F +F
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVA 258
+++G L TE +R +F YG+V+ IV + YGFV N + A
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 344 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 451
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +1
Query: 121 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVAANHSE 273
K+F+G L+ T + + F KYG ++E I+ + YGFV ++ + A E
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 601 QCYRCGRGGPLVQRSARSAGPRPQR----FPRSSVRPRS 705
+CYRCG G + + S P+ R + RS V+ RS
Sbjct: 81 KCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRS 119
>At1g26780.1 68414.m03260 myb family transcription factor (MYB117)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 280
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 551 SCRRVVSGSGRAWATPSSATAVAAGGHW 634
S ++ + SG++W++ SS +V GHW
Sbjct: 74 SGKKETTDSGQSWSSSSSKPSVLGRGHW 101
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 347 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFV 469
P+ + VGN++ E++ LF++FG + +N GF+
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFV 234
+ +GN+S + +L+ LFE++G + +N GF+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +2
Query: 266 IQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDKTRAPEVRELFQK 421
I + G +V G A+ + +K++ + + T TK+ V N+ + EVR+LF
Sbjct: 314 ILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTP 373
Query: 422 FGTV 433
FG +
Sbjct: 374 FGQI 377
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 269 QNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQKF 424
++L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF F
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPF 692
Query: 425 GTV 433
G +
Sbjct: 693 GQI 695
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 100 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 222
+P G+ ++FIG L E DLR L E+ G + E ++++
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKD 150
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 249
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 106 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 204
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 356 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 508
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 27.5 bits (58), Expect = 9.3
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 68 YSLYIVTHNLKCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAI-----SSEITVS 232
YS +V H + R+ V S +G I Q PI D T +S N SS +
Sbjct: 899 YSSSVVRHKHETRSNV---SVNG---ISIQVPISDDCEDGTPQSSNLALNIQGSSNSSPK 952
Query: 233 CTWKTNKWPRTIQNLNGELVHG 298
T + W R+ +LNG L HG
Sbjct: 953 ATAPRSMWNRSKSSLNGHLSHG 974
>At3g56570.1 68416.m06290 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 531
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 407 ELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKS*TV*WSTDS 538
E+F +G + ++ YGF LD D+ + WST S
Sbjct: 305 EVFNTYGLMGNAALLHRYGFTELDNPYDIVNIDLELVTEWSTSS 348
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMEN 246
+++ NLS+ E LR +F YG +V ++ + +GFV N
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSN 353
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 216
+F+ +S +TE L F +YG V++ D++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVI 53
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 124 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVA 258
+F+GN+ TE LR + + G VV +V + YGF ++E+ A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 353 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 460
T + V NL R ++R+ F++FG V + + R+Y
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDY 71
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 441 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 337
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,896
Number of Sequences: 28952
Number of extensions: 354137
Number of successful extensions: 1670
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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