Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021162
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 458 QPSNTPMSIPPQCSGMCPFIR 396
           +P  TP S+ P  +G+ P++R
Sbjct: 250 RPKMTPQSLLPSQTGLSPYLR 270


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 481 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 329
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 481 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 329
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 481 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 329
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 481 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 329
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 488 HPYASS-SATRQPSNTPMSIPPQ 423
           HP+  S      PS+TP S+P Q
Sbjct: 65  HPWKKSPQGAPSPSSTPSSLPTQ 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,754
Number of Sequences: 336
Number of extensions: 4403
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)