Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021162
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.58 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.4  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   2.4  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   2.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.4  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    25   9.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.5  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1587 PTSPSYSPTSPSYSPTS--PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1601 PTSPSYSATSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -2

Query: 482  YASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMISS 312
            Y  +S +  PS+   S  P      P   PTS ++  T   YSP   SY P +   S+
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSA 1608



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1615 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1629 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1643 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1657 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1671 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +   S
Sbjct: 1685 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 485  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 327
            P + S +   PS +P S  P  S   P   PTS ++  T   YSP   SY P +
Sbjct: 1699 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 525 GQTPVIIAGNKEQQKKYLGRLIDEPLV 605
           G   + ++ + E+ KKY+GR +  PL+
Sbjct: 262 GDRAIAVSPHDERYKKYVGRFVKHPLI 288


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 SLLYNGPRVLPRLIILTRHXXDFILRE 304
           S + NG RVLP   I  RH   +I+RE
Sbjct: 12  STMRNGARVLPPEAISKRHIGPYIIRE 38


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 463 QDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 329
           ++N     CP     L CV S+ +LP      A G P S + D P
Sbjct: 249 EENIMLTMCPLSNLKLRCVNSIAELPVREFLEA-GVPFSINCDDP 292


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 GSQWTWPNSRHYCWK*GAAEEISG*TNRRTISRCL 613
           G++W+W N    CW  G+   ISG  N     R L
Sbjct: 487 GTEWSWQNLNTLCWAIGS---ISGAMNEEMEKRFL 518


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 515  GFLAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTT 369
            G    IIPV+P   SS+   P  T  +  P  SG  P    T+Q   TT
Sbjct: 879  GGTTTIIPVNPGNPSSSVSAPPTTSFTPGPGGSGY-PSYSNTTQGMNTT 926


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 551 SSNNDGSLAKSTGFLAVIIPVHPYASSSATRQPSNT 444
           SS+ND  +  S G L+V +    Y  S    +PS++
Sbjct: 88  SSDNDNKICISQGILSVTLDKDSYLVSGIDAKPSSS 123


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 522 LGQTPVIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDV---AGIKTRAEKKGDEWI 692
           +  TP+ I+  K+ +  + G  I     A Y VT P  G  +   A IK      G++  
Sbjct: 1   MSTTPLSISRAKKYKTVFKGAAILTTFAALYIVTSPSTGKRLVKNASIKGLYNVSGNDCF 60

Query: 693 LN 698
           LN
Sbjct: 61  LN 62


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 364  WPVVKKAWEVGLMNGHIPEHCGGMDMGVFDGCLVAEELAYGCTGIMTARKPVDLAKLPSL 543
            W  +  +W   L    + ++ G    G+F G L+A  + +G + +  A  P    + PS+
Sbjct: 2074 WSAILWSWGDLLSKKDLTQNVGP---GIFAGGLIASFICFGLSYVTFAGLPAFYRQAPSI 2130

Query: 544  LLEIRSS--RRNI 576
            +     S  +RNI
Sbjct: 2131 IPAFYRSLGKRNI 2143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,317
Number of Sequences: 5004
Number of extensions: 70927
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)