Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021162
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 6e-36
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 69 6e-12
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 49 4e-06
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 47 2e-05
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 30 1.9
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 30 2.5
SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21) 28 7.6
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 148 bits (358), Expect = 6e-36
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +3
Query: 510 EASGLGQTPVIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEW 689
EA+ L + PVI+AGN+EQ+KKYLGR+I EP++AAY VTEP AGSDVAGIKTRAEKKGDE+
Sbjct: 203 EANSLAEMPVILAGNEEQKKKYLGRMIKEPIMAAYCVTEPTAGSDVAGIKTRAEKKGDEY 262
Query: 690 ILNGPKMWITNGGVANWYFVLART 761
++NG KMWITNGGVANWYFVLART
Sbjct: 263 VINGQKMWITNGGVANWYFVLART 286
Score = 51.2 bits (117), Expect = 9e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +1
Query: 427 GGMDMGVFDGCLVAEELAYGCTGIMTARKPVDLAKLPSLL 546
GG+ +GV DGC+V EEL+Y C+GI TA + LA++P +L
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVIL 214
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +1
Query: 256 FELTDEQKALQELARKFTKDEIXXVAGQYDKTGE 357
F ++DE +ALQ++ARKF ++EI A ++DKTGE
Sbjct: 36 FAMSDELRALQDMARKFAREEIMPKAAEHDKTGE 69
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 78.6 bits (185), Expect = 5e-15
Identities = 36/71 (50%), Positives = 49/71 (69%)
Frame = +3
Query: 549 GNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGPKMWITNGG 728
GNKEQ++KYL +L+ + A ++E AGSDV +K RA+K GD ++LNG KMWITNG
Sbjct: 140 GNKEQKRKYLPKLLSGEHIGALAMSEANAGSDVVSMKLRADKDGDHYVLNGHKMWITNGP 199
Query: 729 VANWYFVLART 761
A+ V A+T
Sbjct: 200 DADVLIVYAKT 210
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 LTDEQKALQELARKFTKDEIXXVAGQYDKTGEYPW--PVVKKAWEVGLMNGHIPEHCGGM 435
LT EQ L+E+A F ++E+ A Q DK +P KK ++G +P GG+
Sbjct: 41 LTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITVPVDDGGI 100
Query: 436 DMGVFDGCLVAEELA 480
G + +V EE++
Sbjct: 101 GSGYMEHIIVLEEMS 115
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 76.2 bits (179), Expect = 3e-14
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +3
Query: 531 TPVIIA-GNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGPK 707
TP ++ G++E ++++L I V GV+E GAGSDVA IKT A K GD++++NG K
Sbjct: 350 TPALVRFGSEELKQQFLVPTIAGDFVTCLGVSETGAGSDVASIKTTAVKDGDDYVINGGK 409
Query: 708 MWITNGGVANWYFVLART 761
MW TNG A+W +LA T
Sbjct: 410 MWTTNGIQADWMCLLANT 427
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = +3
Query: 600 LVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGPKMWITNGGVANWYFVLART 761
+V GV+E GAGSDVAG+KT A+K GD++++NG KMWITN A++ +LA T
Sbjct: 1 MVGCIGVSEVGAGSDVAGLKTTAKKDGDDYVINGSKMWITNSPSADFICLLANT 54
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 537 VIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGPKMWI 716
++ G KEQ+++YL +L +V + ++E +GSD +KT A +K ++LNG KMWI
Sbjct: 135 IMTYGTKEQKQEYLPQLAQH-MVGGFCLSEESSGSDAFALKTVALEKDGHFVLNGSKMWI 193
Query: 717 TNGGVANWYFVLA 755
TN A + V+A
Sbjct: 194 TNAEYAGVFLVMA 206
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +1
Query: 259 ELTDEQKALQELARKFTKDEIXXVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGMD 438
+L++E++ +++ +F K++I + + D+ + ++K +E GLM I GG D
Sbjct: 41 QLSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGGTD 100
Query: 439 MGVFDGCLVAEELA 480
F LV EELA
Sbjct: 101 STFFAANLVIEELA 114
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 58.0 bits (134), Expect = 8e-09
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +1
Query: 259 ELTDEQKALQELARKFTKDEIXXVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGMD 438
+L + + L++ R F +E+ VAG++DK YP VK E+GL+ +PE GG
Sbjct: 40 KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99
Query: 439 MGVFDGCLVAEELAYGCTGI 498
+ F + EE++ GC +
Sbjct: 100 LDAFAYAIAMEEISRGCASL 119
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 549 GNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGPKMWITNG 725
G Q+++++ ++ V + ++EP GSD KT A GD ++LNG K WITNG
Sbjct: 129 GTDAQKEEWIKPFLNGDRVGCFALSEPDNGSDAGAAKTTAVLDGDHYVLNGTKAWITNG 187
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 549 GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWILNGPKMWITNG 725
G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD +++NG K W +
Sbjct: 138 GSPEQKKKWLDPLLNGEMRSAFCMTEPGVASSDATNMECKITRHGDHYVINGRKWWSSGA 197
Query: 726 G 728
G
Sbjct: 198 G 198
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +3
Query: 513 ASGLGQTPVI-IAGNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDE 686
+S G V+ + G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD
Sbjct: 85 SSDSGNMEVLHLYGSPEQKKKWLDPLLNGDIRSAFCMTEPGVASSDATNMECKITRHGDH 144
Query: 687 WILNGPKMW 713
+++NG K W
Sbjct: 145 YVINGRKWW 153
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 525 GQTPVIIA-GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWILN 698
G V+I G+ Q++K+L L+D + + + +TEP A SD A I++ GD ++LN
Sbjct: 313 GNMEVLIRYGSDAQKEKWLEPLLDGRIRSCFAMTEPQVASSDAANIESSIRVDGDHYVLN 372
Query: 699 GPKMWIT 719
G K WI+
Sbjct: 373 GRKWWIS 379
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 262 LTDEQKALQELARKFTKDEIXXVAGQYDKTGEYPWPVVKKAWEVG 396
LT+ L + K E A Y+ TG W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 460 DNHQTHPCPYHRNVLECVRSLGQLPKPSLQR---ATGTPPSYHIDPPQX*FHPS 308
D HP +HR V R + Q PS+ R TPPS I + HP+
Sbjct: 450 DASPLHPAGFHRRVTPPSRGISQTRHPSIPRDLTDVCTPPSRGISQTRSPLHPA 503
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 445 HPCPYHRNVLECVRSLGQLPKPSLQR---ATGTPPSYHIDPPQX*FHPS 308
HP +HR V R + Q PS+ R TPPS I + HP+
Sbjct: 199 HPAGFHRRVTPPSRGISQTRHPSIPRDFTDAFTPPSRGISQTRSPLHPA 247
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -2
Query: 521 STGFLAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL- 345
S+G+ P + S + PS +P S P S P PTS ++ T YSP
Sbjct: 446 SSGYSPASPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 503
Query: 344 SY*PATXMIS 315
SY P + S
Sbjct: 504 SYSPTSPSYS 513
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
P + S + PS +P S P S P PTS ++ T YSP SY P + S
Sbjct: 472 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 527
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
P + S + PS +P S P S P PTS ++ T YSP SY P + S
Sbjct: 486 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 541
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
P + S + PS +P S P S P PTS ++ T YSP SY P + S
Sbjct: 500 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 555
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
P + S + PS +P S P S P PTS ++ T YSP SY P + S
Sbjct: 514 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 569
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATXMIS 315
P + S + PS +P S P S P PTS ++ T YSP SY P + S
Sbjct: 528 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 583
>SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 485 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVLSY*PATXMISSF 309
P S S R+PS P S+P C + PTS + G G S + P + + F
Sbjct: 651 PKTSGSLAREPSTAP-SLP------CDLVAPTSAKMYLAGQGGSGKTEWAPDSQQLEVF 702
>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
Length = 172
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 241 DNRLFFELTDEQKALQELARKFTKDEIXXVAGQYDKTG 354
D + + +K +Q+ K T DE+ + Q+DK G
Sbjct: 50 DGNRALNIDEFRKGMQDFGTKLTDDEVKQLFAQFDKDG 87
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 533 SLAKSTGFLAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYS 354
++ +T + ++P P +S S QPS+TP+ PP G TS + + H
Sbjct: 373 TVTTTTATSSSMLPNTPSSSPSTGTQPSSTPIHEPP-TQGTTLVTMETSTSHLKSSHHSR 431
Query: 353 P 351
P
Sbjct: 432 P 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,213,877
Number of Sequences: 59808
Number of extensions: 541675
Number of successful extensions: 2052
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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