Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021162
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 271 HRLIRKKACCRYWL 230
           H   RKK CCR WL
Sbjct: 392 HMQPRKKNCCRSWL 405


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 271 HRLIRKKACCRYWL 230
           H   RKK CCR WL
Sbjct: 392 HMQPRKKNCCRSWL 405


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 458 QPSNTPMSIPPQCSGMCPFIR 396
           +P  TP S+ P  +G+ P++R
Sbjct: 254 RPKMTPQSLLPSQTGLSPYLR 274


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 621  SPHRQRLMVRRLVYPDISSAAPYFQQ**REFGQVHW 514
            SP+   L++R  V+PD      YF    R   + HW
Sbjct: 1509 SPNSTTLVLRLHVWPDNGCPILYFTIQYRPINEFHW 1544


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 621  SPHRQRLMVRRLVYPDISSAAPYFQQ**REFGQVHW 514
            SP+   L++R  V+PD      YF    R   + HW
Sbjct: 1505 SPNSTTLVLRLHVWPDNGCPILYFTIQYRPINEFHW 1540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,928
Number of Sequences: 438
Number of extensions: 5764
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)