Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021161
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 108 7e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 53 5e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 45 1e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 3e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 40 5e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.002
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 37 0.003
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.003
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.011
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.019
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.058
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 1.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.6
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 2.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.9
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 2.9
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 5.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.6
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 8.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 108 bits (260), Expect = 7e-25
Identities = 61/141 (43%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EY+ E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSD 615
K +G++ PTPIQ Q WP+AMSG+ + S G + + L + S
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 616 CLVLAPTRELAQQIQQVAADF 678
LVLAPTRELA QIQQ F
Sbjct: 198 VLVLAPTRELAVQIQQECTKF 218
Score = 60.9 bits (141), Expect = 2e-10
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIAWSWRLPES*HNKFSKLLQIFGHTSYVRNT 706
TGSGKTL+Y LPAIVHIN QP + GDGPI + + FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 707 CVF 715
CV+
Sbjct: 228 CVY 230
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.0 bits (124), Expect = 2e-08
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E + + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVG--LHLASHCAHKQPTAYSER 603
+ ++GY++PT IQAQ P SG+ + + G + + L + H ++P E
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGE- 490
Query: 604 *WSDCLVLAPTRELAQQI 657
+++ PTRELA QI
Sbjct: 491 -GPIAIIMTPTRELAVQI 507
Score = 46.4 bits (105), Expect = 4e-06
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+TGSGKT+A++LP HI +Q P++ G+GPIA
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.8 bits (121), Expect = 5e-08
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Frame = +1
Query: 340 KNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I* 513
K ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K I
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 514 LAYSNGFRQNVGLHLASHCAHKQP--TAYSER*WSDCLVLAPTRELAQQIQ 660
+A + + + K P T + +VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIA 619
+TGSGKT A+I+P I+ I+ PP+ + GP A
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 44.8 bits (101), Expect = 1e-05
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCA 573
FE+ + G+ G++ P+PIQ + PIA+SG+ LA + NG + + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103
Query: 574 HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTHI 690
K T S+ L+L PTRELA Q QV H+
Sbjct: 104 EKVDTKKSK---IQTLILVPTRELALQTSQVCKTLGKHM 139
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 43.6 bits (98), Expect = 3e-05
Identities = 35/120 (29%), Positives = 55/120 (45%)
Frame = +1
Query: 331 EEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G+
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 511 *LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTHI 690
+A + + G Q S R + L+L+PTRELA QIQ V H+
Sbjct: 61 VIAQA---QSGTGKTATFSIGILQSIDLSVRD-TQALILSPTRELAVQIQNVVLALGDHM 116
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.6 bits (98), Expect = 3e-05
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NG 531
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+ +A + G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 532 FRQNVG--LHLASHCAHKQPTA----------YSER-*WSDCLVLAPTRELAQQIQQVAA 672
+ G + S K P A Y R + L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 673 DF 678
F
Sbjct: 277 KF 278
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI F+E + +++G+K YKEPTPIQA WP ++G+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHIN 580
+TGSGKT+A+ +PA+ ++N
Sbjct: 210 ETGSGKTVAFGIPALQYLN 228
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNV 546
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK +A +
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 547 GLHLAS--HCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
+L KQ + L+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYSNGFRQNVGLHLASHCA 573
F+ N +++ V G+K+ TP+QA P+ + K + + G + + L C
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP--CF 60
Query: 574 HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
K ++ L++APTRELA QI V +
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKE 94
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/96 (25%), Positives = 44/96 (45%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASH 567
I+ F + + +Q+ +K MG++ T IQ + P ++G+ L + L
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 568 CAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
+ R + ++++PTRELA QI VA +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI 568
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKI*LAYSNGFRQNVGLHLAS 564
I F++ N + +G+ G++ P+ IQ + PI + +G + ++
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSIS- 76
Query: 565 HCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
K T+ + L+LAPTRELAQQIQ+V
Sbjct: 77 -VLQKIDTSLKQ---CQALILAPTRELAQQIQKV 106
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
F+ + + + G+K PTPIQ + P+ + G+ + + + H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ T + + L+L+P RELA Q +V DF
Sbjct: 131 LKSTLANSN--TRALILSPNRELALQTVKVVKDF 162
Score = 29.1 bits (62), Expect = 0.71
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINN 583
+TGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.1 bits (77), Expect = 0.011
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
F+E D + + + +G+K PTPIQ + P+ ++ + + G Q A+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI----GLAQTGSGKTAAFALP 103
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
++ +VLAPTRELA QI +
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQP 589
QTGSGKT A+ LP I + N P
Sbjct: 91 QTGSGKTAAFALPVIQELWNNP 112
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.019
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYSNGFRQNVG--LHLASH 567
F+ N + +G+ +G++ PT IQ + P+A+ GK I A G + + +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 568 CAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVA 669
++ + R L+L PTRELA Q VA
Sbjct: 321 LLYRPKKVPTTR----VLILCPTRELAMQCHSVA 350
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP 589
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 32.7 bits (71), Expect = 0.058
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGKI*LAYSN---GFRQNVGLHLASHCAHKQPTAYSER*WSDC 618
G+ +P PIQ+ P A G + ++ G G+ + HC Y +
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQ-----A 195
Query: 619 LVLAPTRELAQQIQQ 663
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVH 574
+ TGSGKTLA+ +P + H
Sbjct: 165 KADTGSGKTLAFGIPILEH 183
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQP 589
QTGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 619 LVLAPTRELAQQIQQVA 669
+++APTREL QQI VA
Sbjct: 220 VIMAPTRELCQQIYNVA 236
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPP 592
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI 577
+TGSGKTLA+I+P I ++
Sbjct: 84 KTGSGKTLAFIVPLIENL 101
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPP 592
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/37 (21%), Positives = 22/37 (59%)
Frame = +3
Query: 150 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGICF 260
+ D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 527 TGSGKTLAYILPAI 568
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------KNNHEVTVSGVEVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQYFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 530 GSGKTLAYILPAIVHINNQPPIRRGDGPIAWSWRLPE 640
GSG+TLA + P ++ +N + W+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 542 FCRNPFEYAN*IFPDIAIGQP 480
FC NP N +FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPP 592
TGSGKT+AY+ P + + P
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP 113
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 647 HNKFSKLLQIFGHTSYVRNTC 709
H K+ K+ ++ GHT +R+ C
Sbjct: 202 HGKWKKVAELPGHTDLIRDIC 222
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 459 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIIFVLFDFI 322
FF Y ++ I+ CFF +NR T+S L++ ++L I
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFS-LIVFYILIMII 60
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQP 589
+TGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,822
Number of Sequences: 5004
Number of extensions: 61610
Number of successful extensions: 209
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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