Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021161
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 83 3e-16
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 52 3e-07
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 46 4e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 44 9e-05
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 43 2e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 43 2e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 42 5e-04
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 41 0.001
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 41 0.001
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 41 0.001
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 39 0.003
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 39 0.003
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 39 0.004
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 36 0.041
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 36 0.041
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 36 0.041
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 35 0.054
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 35 0.071
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 35 0.071
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 34 0.12
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.88
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 30 1.5
Z83239-3|CAB05810.1| 344|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 30 2.0
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical ... 29 2.7
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 8.2
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 82.6 bits (195), Expect = 3e-16
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE-L 144
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDC 618
+++PT IQ+ WPIAMSG+ ++ + + H A+ +R
Sbjct: 145 LYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPA 204
Query: 619 -LVLAPTRELAQQIQQVAADF 678
LVL PTRELAQQ+Q+V+ DF
Sbjct: 205 VLVLLPTRELAQQVQEVSIDF 225
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAWSWRLPES*HNKFSKLLQIFGHTSYVRN 703
+TGSGKTLA++LPA+VHI Q +RG+GP + ++ F H+ ++
Sbjct: 174 KTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKM 233
Query: 704 TCVF 715
TC+F
Sbjct: 234 TCLF 237
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH--KQPTAYSER*W 609
++ Y++PTPIQA P A+SG+ L + +L H QP +
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGE-G 338
Query: 610 SDCLVLAPTRELAQQIQQVAADF 678
+++ PTRELA Q+ Q A F
Sbjct: 339 PVAVIVVPTRELAIQVFQEAKKF 361
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +1
Query: 337 YKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L 516
++ + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + + +
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 517 AYSNGFRQNVGLHLASHCAHKQPTAYSER-----*WSDCLVLAPTRELAQQIQQVAADF 678
+ L ER +++APTRELAQQI++ F
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKF 401
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRR 601
+TGSGKT A++LP +V I + P + R
Sbjct: 346 ETGSGKTAAFLLPLLVWITSLPKMER 371
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V + F KNFY + + + EV+ Y+ + +TV G++ PI+ + + +
Sbjct: 258 VYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMN 317
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*W 609
+K Y +PT IQAQ P MSG+ + + G + + L E
Sbjct: 318 VLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDG 377
Query: 610 SDCLVLAPTRELAQQIQQVAADF 678
++LAPTRELA Q + A F
Sbjct: 378 PIAVILAPTRELAMQTYKEANKF 400
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+TGSGKTLA++LP HI +QP + GDGPIA
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELEEGDGPIA 380
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 52.4 bits (120), Expect = 3e-07
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Frame = +1
Query: 253 FVSLQPFNKNFYDPHPTVLKRSPYEVEE-YKNNHEVTV------SGVEVHNPIQYFEEAN 411
F ++P ++ Y SP +++E Y N + V S V++ P+ FE+A
Sbjct: 30 FSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAF 89
Query: 412 FPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN-------GFRQNVGLHLASH 567
+ G ++ G+++P+PIQ+Q WP+ +SG+ + S F LH+ +
Sbjct: 90 GSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
Query: 568 CAHKQPTAYSER*WSDCLVLAPTRELAQQIQ 660
A + ++ LVL+PTRELAQQI+
Sbjct: 150 LAQYEKNDEEQKPSPFVLVLSPTRELAQQIE 180
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 521 TQTGSGKTLAYILPAIVHINNQ 586
+QTGSGKTLA++LPA++HI+ Q
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQ 149
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 50.0 bits (114), Expect = 2e-06
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS 525
N V VSG V I++F EA F V + V GY +PTP+Q P ++ + ++ +
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 183
Query: 526 N-------GFRQNVGLH-LASHCAHKQPTAYS--ER*WSDC-LVLAPTRELAQQIQQVAA 672
F + H LA +P A++ R + C LVL+PTRELA QI + A
Sbjct: 184 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 243
Query: 673 DF 678
F
Sbjct: 244 KF 245
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 50.0 bits (114), Expect = 2e-06
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS 525
N V VSG V I++F EA F V + V GY +PTP+Q P ++ + ++ +
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 167
Query: 526 N-------GFRQNVGLH-LASHCAHKQPTAYS--ER*WSDC-LVLAPTRELAQQIQQVAA 672
F + H LA +P A++ R + C LVL+PTRELA QI + A
Sbjct: 168 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 227
Query: 673 DF 678
F
Sbjct: 228 KF 229
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 50.0 bits (114), Expect = 2e-06
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS 525
N V VSG V I++F EA F V + V GY +PTP+Q P ++ + ++ +
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 164
Query: 526 N-------GFRQNVGLH-LASHCAHKQPTAYS--ER*WSDC-LVLAPTRELAQQIQQVAA 672
F + H LA +P A++ R + C LVL+PTRELA QI + A
Sbjct: 165 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 224
Query: 673 DF 678
F
Sbjct: 225 KF 226
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 45.6 bits (103), Expect = 4e-05
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NG 531
V +G +V PI F + + +++++ +KT GY PTP+Q P G+ ++ + G
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 532 FRQ---------NVGLHLASHCAHKQPTAYS--ER*WSDCLVLAPTRELAQQI 657
+ N L H+ T+ ++ + LVL+PTREL+ QI
Sbjct: 214 SGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQI 266
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 44.4 bits (100), Expect = 9e-05
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 468
P + ++S + E + ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 469 IQAQGWPIAMSGK--I*LAYS-NGFRQNVGLHLASHCAH---KQPTAYSER*WSDCLVLA 630
IQ QG P+A+SG+ I +A + +G L L C K P SE + L++
Sbjct: 216 IQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFG--LIIV 273
Query: 631 PTRELAQQI 657
P+RELA+QI
Sbjct: 274 PSRELARQI 282
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS---NGFRQNVGLH 555
P + F +++ P +++ V+ GY TPIQ P+ GK LA + +G L
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
Query: 556 LASHCAHKQPTAYSER--*WSDCLVLAPTRELAQQIQQVAADF 678
+ S ++ Y + C++L PTRELA QI F
Sbjct: 356 IMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKF 398
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS---NGFRQNVGLH 555
P + F +++ P +++ V+ GY TPIQ P+ GK LA + +G L
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
Query: 556 LASHCAHKQPTAYSER--*WSDCLVLAPTRELAQQIQQVAADF 678
+ S ++ Y + C++L PTRELA QI F
Sbjct: 356 IMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKF 398
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYSNGFRQNVG--LHLASH 567
FE+ N + + GY +PTPIQ P+A++GK I + G + L +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 568 CAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTHI 690
++ A R LVL PTRELA Q+ QV T I
Sbjct: 210 MIYRPKGASCTR----VLVLVPTRELAIQVFQVFRKLSTFI 246
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLAS 564
P + F EAN + +Q+ V GY + TPIQ P+ G +A + L
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 565 HCA-----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTRELA QI F
Sbjct: 399 IMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLAS 564
P + F EAN + +Q+ V GY + TPIQ P+ G +A + L
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 565 HCA-----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTRELA QI F
Sbjct: 399 IMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLAS 564
P + F EAN + +Q+ V GY + TPIQ P+ G +A + L
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 565 HCA-----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTRELA QI F
Sbjct: 399 IMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN---GFRQNVGLHL 558
++ F++ + + +G+ G+++P+ IQ + +GK +A + G + +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 559 ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
H+ P + LV+APTRELAQQIQ+V
Sbjct: 88 LQRIDHEDPHVQA-------LVMAPTRELAQQIQKV 116
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN---GFRQNVGLHL 558
++ F++ + + +G+ G+++P+ IQ + +GK +A + G + +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 559 ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
H+ P + LV+APTRELAQQIQ+V
Sbjct: 88 LQRIDHEDPHVQA-------LVMAPTRELAQQIQKV 116
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/86 (27%), Positives = 41/86 (47%)
Frame = +1
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WS 612
G+ G+++P+PIQ +A++G+ LA + G + QP + +
Sbjct: 57 GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQ--- 113
Query: 613 DCLVLAPTRELAQQIQQVAADFWTHI 690
+V+ PTRELA Q Q+ + HI
Sbjct: 114 -AMVIVPTRELALQTSQICVELSKHI 138
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 35.5 bits (78), Expect = 0.041
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCA- 573
F EAN + +++ V GY + TPIQ P+ G +A + L A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 574 ----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTREL QI F
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 35.5 bits (78), Expect = 0.041
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCA- 573
F EAN + +++ V GY + TPIQ P+ G +A + L A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 574 ----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTREL QI F
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 35.5 bits (78), Expect = 0.041
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCA- 573
F EAN + +++ V GY + TPIQ P+ G +A + L A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 574 ----HKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+ TA + C++L PTREL QI F
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 35.1 bits (77), Expect = 0.054
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +1
Query: 382 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLA 561
N I F++ + + +G+ G+++P+ IQ + P + + +A +
Sbjct: 23 NVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSI 82
Query: 562 SHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
S T E + L+L+PTRELA QIQ+V
Sbjct: 83 S-VLQSLDTQVRE---TQALILSPTRELAVQIQKV 113
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 34.7 bits (76), Expect = 0.071
Identities = 27/99 (27%), Positives = 43/99 (43%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHL 558
H +++ V + ++ G+ +PTPIQ + P M GK +A S R G
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMS---RTGSGKTA 76
Query: 559 ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
A Q + L+++PTRELA Q +V +
Sbjct: 77 AFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKE 115
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 34.7 bits (76), Expect = 0.071
Identities = 27/99 (27%), Positives = 43/99 (43%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHL 558
H +++ V + ++ G+ +PTPIQ + P M GK +A S R G
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMS---RTGSGKTA 76
Query: 559 ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
A Q + L+++PTRELA Q +V +
Sbjct: 77 AFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKE 115
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +1
Query: 340 KNNHEVTVS--GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI* 513
KN+ TV E + I F++ + + +G+ G+++P+ IQ + P + +
Sbjct: 7 KNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDV 66
Query: 514 LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
+A + S T E + L+L+PTRELA QIQ+V
Sbjct: 67 IAQAQSGTGKTATFSIS-VLQSLDTQVRE---TQALILSPTRELAVQIQKV 113
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 32.3 bits (70), Expect = 0.38
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYSNGFRQNV--GLHLASHCAH-- 576
P+ V + ++ MG+ EPT IQ+ P A+ + + A G + + G+ L +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESS 222
Query: 577 --KQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
Q T +E L++APTREL QI +
Sbjct: 223 DDSQETESTEVRGPRALIVAPTRELVIQIMK 253
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYSNGFRQNVGLHLASHC 570
F E + + +G+ +P+ IQ P A+ GK I LA + +
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105
Query: 571 AHKQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
P A+ CLVL PTRELA QI Q
Sbjct: 106 LLDHPQAFF------CLVLTPTRELAFQIGQ 130
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 99 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 215
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP 589
TGSGKT+ Y+LP + + ++P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 30.3 bits (65), Expect = 1.5
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Frame = +1
Query: 325 EVEEYKNNHEVT--VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E +E+K++ + + E + + F + ++ Q ++TM K TP+QA P +
Sbjct: 65 EGDEFKSSDDTPKPIQISEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKIL 124
Query: 499 SGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
G L + R G LA Q + L+L PTRELA QI +
Sbjct: 125 EGSDILGCA---RTGTGKTLAFAIPILQKLSVDPY-GIYALILTPTRELAFQIAE 175
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 30.3 bits (65), Expect = 1.5
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Frame = +1
Query: 325 EVEEYKNNHEVT--VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E +E+K++ + + E + + F + ++ Q ++TM K TP+QA P +
Sbjct: 65 EGDEFKSSDDTPKPIQISEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKIL 124
Query: 499 SGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
G L + R G LA Q + L+L PTRELA QI +
Sbjct: 125 EGSDILGCA---RTGTGKTLAFAIPILQKLSVDPY-GIYALILTPTRELAFQIAE 175
>Z83239-3|CAB05810.1| 344|Caenorhabditis elegans Hypothetical
protein T09F5.3 protein.
Length = 344
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = -1
Query: 480 LSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIIFVLFDFIW*SFE 307
+ L+ + T C + ++ F + I + +TY +V+IF L ++ +E
Sbjct: 1 MELHELSYMFTKCGFGACFVVNSFFIFLTITSIKRIYSTYKIMVVIFALMGILFAGWE 58
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI 568
+TGSGKTLA++LPAI
Sbjct: 113 KTGSGKTLAFLLPAI 127
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Frame = +1
Query: 304 VLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 483
V KR +++ + + + G + N I F +++ + + ++P+PIQ Q
Sbjct: 97 VEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQS 156
Query: 484 WPIAMSGKI*LAYS---NGFRQNVGLHLASHCAH-KQPTAYSER*WSDCL--VLAPTREL 645
P + LA + +G L + KQ YS S L VL PTREL
Sbjct: 157 IPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTREL 216
Query: 646 AQQ 654
A Q
Sbjct: 217 AAQ 219
>AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical
protein C17A2.1 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/78 (23%), Positives = 35/78 (44%)
Frame = +1
Query: 295 HPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
H + R+ +V ++ N + T+ +H + +E A F + +K + I
Sbjct: 213 HNKEISRTDKKVMKFINQVKSTLGTALIHLKLNIYEFAAFKSFCIWNIKFHKTSQTMRIV 272
Query: 475 AQGWPIAMSGKI*LAYSN 528
AQG +A+S + + Y N
Sbjct: 273 AQGHYVAVSSALRVYYKN 290
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVH 574
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINN 583
TGSGKTLA++LP + I N
Sbjct: 55 TGSGKTLAFVLPMMRMIQN 73
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 151 RIIAEFVASSKFGTTVSTAIIPV 83
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 151 RIIAEFVASSKFGTTVSTAIIPV 83
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 227 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 126
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,082
Number of Sequences: 27780
Number of extensions: 355335
Number of successful extensions: 1084
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -