Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021161
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 113 2e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 102 3e-22
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 102 3e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 5e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 7e-14
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 73 2e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 73 3e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 59 4e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 1e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 49 3e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 9e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 1e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 45 6e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 1e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 6e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 6e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 41 0.001
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 40 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.007
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 38 0.007
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 38 0.007
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.007
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 37 0.012
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 37 0.012
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.022
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 36 0.022
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 34 0.12
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 33 0.15
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.20
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.20
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 33 0.20
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.20
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 32 0.47
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 31 0.62
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 31 0.62
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 31 0.82
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 31 0.82
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 31 0.82
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 31 0.82
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 31 1.1
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 31 1.1
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.4
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 2.5
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 29 3.3
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 3.3
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 3.3
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.3
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 4.4
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 4.4
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 29 4.4
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 29 4.4
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 5.8
At2g33420.1 68415.m04096 expressed protein 28 5.8
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 7.7
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 28 7.7
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 113 bits (271), Expect = 2e-25
Identities = 67/151 (44%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANF 414
SPR L L PF KNFY P V + EVEEY+ E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYS-NGFRQNVGLHLASHCAHKQP 585
PDYV + VK G+ EPTPIQ+QGWP+AM G+ I +A + +G + L H +
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 586 TAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
A+ + LVLAPTRELA QIQQ A+ F
Sbjct: 167 LAHGD--GPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 102 bits (244), Expect = 3e-22
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V Y+ +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH--KQPTAY 594
+ + + +G+ EPTPIQAQGWP+A+ G+ + + +L H QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 595 SER*WSDCLVLAPTRELAQQIQQVAADF 678
+ L+LAPTRELA QIQ+ + F
Sbjct: 235 QDD-GPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 102 bits (244), Expect = 3e-22
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V Y+ +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH--KQPTAY 594
+ + + +G+ EPTPIQAQGWP+A+ G+ + + +L H QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 595 SER*WSDCLVLAPTRELAQQIQQVAADF 678
+ L+LAPTRELA QIQ+ + F
Sbjct: 235 QDD-GPIVLILAPTRELAVQIQEESRKF 261
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELA 648
QAQ WPIAM G+ +A + G + +G +L H Q R LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 649 QQIQQVAADF 678
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELA 648
QAQ WPIAM G+ +A + G + +G +L H Q R LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 649 QQIQQVAADF 678
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELA 648
QAQ WPIAM G+ +A + G + +G +L H Q R LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 649 QQIQQVAADF 678
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.9 bits (176), Expect = 5e-14
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +Y+ + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSD 615
+K Y++PT IQ Q PI +SG+ + + + H +R
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
Query: 616 C-LVLAPTRELAQQIQQVAADF 678
++ APTRELA QI A F
Sbjct: 303 IGVICAPTRELAHQIFLEAKKF 324
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.5 bits (175), Expect = 7e-14
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ Y+ HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDC 618
+ G+ PTPIQAQ WPIA+ + +A + G + +G + + + R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRH-CRNDSRNGPTV 510
Query: 619 LVLAPTRELAQQIQQVAADF 678
L+LAPTRELA QIQ A F
Sbjct: 511 LILAPTRELATQIQDEALRF 530
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V Y+ E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVG--LHLASHCAHKQPTAYSER* 606
+K + Y++P PIQAQ PI MSG+ + + G + +G L + H + P +
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-- 468
Query: 607 WSDCLVLAPTRELAQQI 657
LV+APTREL QQI
Sbjct: 469 GPIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 72.5 bits (170), Expect = 3e-13
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV Y+ E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVG--LHLASHCAHKQPTAYSER* 606
+K + Y++P PIQ Q PI MSG+ + + G + +G L + H + P +
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-- 601
Query: 607 WSDCLVLAPTRELAQQI 657
LV+APTREL QQI
Sbjct: 602 GPIGLVMAPTRELVQQI 618
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYSNGFRQNV----GLHLASHCAHKQPTA 591
+ +K G PTPIQ QG P+ +SG+ I +A++ + V + LA P A
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 592 YSER*WSDCLVLAPTRELAQQIQQVAADF 678
E LV+ P+RELA+Q V F
Sbjct: 170 AGE--GPIALVICPSRELAKQTYDVVEQF 196
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WS 612
V + G+ P+PIQAQ WPIAM + +A + G + +G +L H Q R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG-YLIPGFMHLQRIHNDSRMGP 302
Query: 613 DCLVLAPTRELAQQIQQVAADF 678
LVL+PTRELA QIQ A F
Sbjct: 303 TILVLSPTRELATQIQVEALKF 324
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYKNNHEVTVSGVEVHNPIQYFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 52.0 bits (119), Expect = 4e-07
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK--I*LAYSNGFRQNV----GLHLASHCAHKQPTAYSER*WSDCLVL 627
PIQ QG P+ ++G+ I +A++ + V + +A P A E L++
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE--GPIGLIV 228
Query: 628 APTRELAQQIQQVAADF 678
P+RELA+Q +V F
Sbjct: 229 CPSRELARQTYEVVEQF 245
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.4 bits (115), Expect = 1e-06
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Frame = +1
Query: 325 EVEEYKNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGK--I*LAYS-NGFRQNVGLHLASHCAHKQPT--AYSER*WSDCLVLAPTRELAQQIQQ 663
G+ I +A + +G G+ H K S++ CLVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 664 V 666
V
Sbjct: 210 V 210
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI 577
+TGSGKTLA+ +PAI+H+
Sbjct: 159 KTGSGKTLAFGIPAIMHV 176
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Frame = +1
Query: 337 YKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I 510
++ + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + + I
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 511 *LAYS-NGFRQNVGLHLASHCAHKQP-TAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+A + +G L + ++ + P + +E +V+APTRELAQQI++ F
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 47.6 bits (108), Expect = 9e-06
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS---NGFR 537
G V P+ F P + ++T GY PTPIQ Q P A++GK LA + +G
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKT 161
Query: 538 QNVGLHLASHC-AHKQPTAYSER*WSDCLVLAPTRELAQQIQQVA 669
+ + + S C + +R +VLAPTREL Q++ A
Sbjct: 162 ASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS---N 528
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+ A + +
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 529 GFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
G L + ++ R L+L PTRELA QI +
Sbjct: 216 GKTAAFALPTLERLLFRPKRVFATR----VLILTPTRELAVQIHSM 257
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.8 bits (101), Expect = 6e-05
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Frame = +1
Query: 340 KNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 508 I*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQ 654
A + G + K+P+ R ++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPSTDGIR----AVILSPARELAAQ 225
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYS---NGFRQNVGLHLASHC---AHKQPTAYSE 600
+ Y +PTP+Q PI + G+ +A + +G + S H Q S
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 601 R*WSDCLVLAPTRELAQQIQQVAADF 678
+ ++L+PTRELA QI A F
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKF 260
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE+ + G+ G++ P+PIQ + PIA++G+ LA + + G A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARA---KNGTG-KTAAFCIP 188
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTHI 690
+ +++ PTRELA Q QV + H+
Sbjct: 189 VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE+ + G+ G++ P+PIQ + PIA++G+ LA + + G A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARA---KNGTG-KTAAFCIP 188
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTHI 690
+ +++ PTRELA Q QV + H+
Sbjct: 189 VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/101 (29%), Positives = 46/101 (45%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLAS 564
PI+ F++ D V +GV GYK+P+ IQ + + G+ +A + + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 565 HCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTH 687
C Q S R LVL+P+RELA Q ++ H
Sbjct: 80 VC---QIVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAH 116
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/93 (29%), Positives = 43/93 (46%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE+ + +G+ G+++P+PIQ + PIA++G LA + G + C
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 211
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
E ++L PTRELA Q QV +
Sbjct: 212 TLEKIDPENNVIQAVILVPTRELALQTSQVCKE 244
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.9 bits (84), Expect = 0.007
Identities = 34/137 (24%), Positives = 54/137 (39%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLV 624
MG+ T IQA+ P M G+ L + L ++ R + LV
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLV 231
Query: 625 LAPTRELAQQIQQVAAD 675
+ PTRELA Q VA +
Sbjct: 232 ICPTRELAIQSYGVAKE 248
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE+ + +G+ G+++P+PIQ + PIA++G LA + G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
++L PTRELA Q QV +
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE+ + +G+ G+++P+PIQ + PIA++G LA + G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQIQQVAAD 675
++L PTRELA Q QV +
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELALQTSQVCKE 214
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/86 (30%), Positives = 40/86 (46%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAH 576
FE N V +K GYK PTPIQ + P+ +SG +A + L
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML-- 87
Query: 577 KQPTAYSER*WSDCLVLAPTRELAQQ 654
++ + + L+L+PTR+LA+Q
Sbjct: 88 EKLKQHVPQGGVRALILSPTRDLAEQ 113
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.012
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS--- 525
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 NGFRQNVGLHLASHC---AHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+G + S H + S + ++L+PTRELA QI A F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.012
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS--- 525
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 NGFRQNVGLHLASHC---AHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADF 678
+G + S H + S + ++L+PTRELA QI A F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.3 bits (80), Expect = 0.022
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y++ + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER------* 606
Y +PTP+Q PI +G+ +A + + + ER
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 607 WSDCLVLAPTRELAQQIQQVAADF 678
+ ++L+PTRELA QI A F
Sbjct: 224 YPLAVILSPTRELACQIHDEARKF 247
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 36.3 bits (80), Expect = 0.022
Identities = 30/110 (27%), Positives = 48/110 (43%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFR 537
T G+E PI F + + V +GV G+++P+ IQ + + G+ +A +
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 538 QNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFWTH 687
+ S C Q S R L+L+PTRELA Q ++ H
Sbjct: 84 GKTSMIALSVC---QVVDTSSR-EVQALILSPTRELATQTEKTIQAIGLH 129
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Frame = +1
Query: 328 VEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 508 I*L-AYSNGFRQNVGLHL-ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQVAADFW 681
L A G + + + A K+ +S R + +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKE--RFSPRNGTGVIVICPTRELAIQTKNVAEELL 185
Query: 682 TH 687
H
Sbjct: 186 KH 187
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI 568
+TGSGKTLA+++PA+
Sbjct: 134 RTGSGKTLAFLIPAV 148
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRR 601
+ +TG+GKT+A++LPAI + PP R
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASR 452
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN-GFRQNVGLHL-ASHCAHKQPTAYSER 603
+ +K G++ T +Q PI + GK LA + G + V L A K P A +
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 604 *WSDCLVLA--PTRELAQQ 654
+VL PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.1 bits (72), Expect = 0.20
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = +1
Query: 325 EVEEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE +N+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 KI*LAYS-NGFRQNVGLHL-ASHCAHKQPTAYSER*WSDCLVLAPTRELAQQI 657
K +A + G + + L + ++ +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAI 568
R +TGSGKTLAY+LP +
Sbjct: 89 RAKTGSGKTLAYLLPLL 105
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.1 bits (72), Expect = 0.20
Identities = 31/112 (27%), Positives = 49/112 (43%)
Frame = +1
Query: 331 EEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-- 76
Query: 511 *LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
L + G A+ C+ LVLAPTRELAQQI++V
Sbjct: 77 -LDVIQQAQSGTG-KTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKV 126
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQ--PTAYSER*WSDC 618
MG++ PT +QAQ P+ +SG+ L + +LA H Q +
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 619 LVLAPTRELAQQIQQ 663
LV+ PTREL Q+ +
Sbjct: 108 LVIVPTRELCLQVYE 122
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 619
TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.1 bits (72), Expect = 0.20
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGL 552
EVH + F+ + + +G+ G+++P+ IQ +G G L + G
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTG- 88
Query: 553 HLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
A+ C+ LVLAPTRELAQQI++V
Sbjct: 89 KTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKV 126
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRR 601
+ +TG+GKT+A++LP+I + PP R
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN-GFRQNVGLHLAS-HC 570
F++ +G++ G+K T +Q P+ + GK LA + G + V L S
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 571 AHKQPTAYSER*WSDCLVLA--PTRELAQQ 654
K P A + +VL PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAY 594
PD ++ G+ G+++P+ IQ +G G L + G A+ C+
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKG---LDVIQQAQSGTG-KTATFCSGVLQQLD 104
Query: 595 SER*WSDCLVLAPTRELAQQIQQV 666
LVLAPTRELAQQI++V
Sbjct: 105 ISLVQCQALVLAPTRELAQQIEKV 128
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L-AYSNGFRQNVGLHLAS 564
++ F + D ++G+K Y + T +Q+ P A+ G+ L A G + + +
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 565 -HCAHKQPTAYSER*WSDCLVLAPTRELAQQ 654
H++ +S C++++PTRELA Q
Sbjct: 130 LEKLHRE--RWSPEDGVGCIIISPTRELAAQ 158
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 494 LCLERFSWRTQTGSGKTLAYILPAIVHINNQ 586
LC +TGSGKTLA+++P + ++ +
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +1
Query: 616 CLVLAPTRELAQQIQQ 663
CLVLAPTRELA+Q+++
Sbjct: 181 CLVLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +1
Query: 616 CLVLAPTRELAQQIQQ 663
CLVLAPTRELA+Q+++
Sbjct: 193 CLVLAPTRELARQVEK 208
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 31.1 bits (67), Expect = 0.82
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KI*LAYS-NGFRQNVGLHLASH 567
FEE PD + ++ G+ PT +Q+ P + G + +Y+ +G L + S
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 568 ---CAHKQPTAYSE---R*WSDCLVLAPTRELAQQI 657
A K +++SE R +++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHI 577
++ TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPP 592
+ +TG+GKT+A++LP+I + PP
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPP 121
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSN-GFRQNVGLHLAS-HCAHKQPTAY--S 597
+ +K GY+ T +Q PI + GK LA + G + V L S K P +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 598 ER*WSDCLVLAPTRELAQQ 654
+R LV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQP 589
R +TG GKTLA++LP + + N P
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +1
Query: 331 EEYKNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG- 504
E +N + SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 71 EPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPP 130
Query: 505 -KI*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCLVLAPTRELAQQIQQV 666
K +A ++ + + PT + L + PTRELA Q +V
Sbjct: 131 HKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQ----ALCICPTRELANQNMEV 181
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQ 586
Q+GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYSNGFRQNVGLHLASHCAHKQPTAY 594
P+++ ++ +G+ PT IQ + P +G+ + ++ +L + P
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 595 SER*WSDCLVLAPTRELAQQIQQVA 669
S + +++ PTREL Q+ +VA
Sbjct: 144 SVQ----AVIVVPTRELGMQVTKVA 164
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 521 TQTGSGKTLAYILPAI 568
+ TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFTPTF 272
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQNVGLHL-ASHC 570
FE ++ + K +G ++PTP+Q P ++G+ L + G + L H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 571 AHKQPTAYSER*WSDCLVLAPTRELAQQIQQ 663
+ P LV+ PTRELA Q+ +
Sbjct: 120 LAEDPYGVF------ALVVTPTRELAFQLAE 144
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYKNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPP 592
TGSGKTLA++LP I I N+ PP
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGK-I*LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDC-L 621
G++ TP+QA+ P S K + + + G + + L ++ +Y + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGV 94
Query: 622 VLAPTRELAQQIQQVAADF 678
+++PTREL+ QI +VA F
Sbjct: 95 IISPTRELSAQIHKVAEPF 113
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPP 592
TGSGKTLA++LP I I N+ PP
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIR 598
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 423 CATRCKDNGLQRTDAYSSSRLADSYVWKDLVGVLKR 530
C T + GL+ + Y ++RLA S V K+L+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 401 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCLERFSWRTQTGSGKTLAYILPA 565
K ++F C K Q+ + +FK++ G + + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,855
Number of Sequences: 28952
Number of extensions: 326610
Number of successful extensions: 1044
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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