Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021160
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ISI8 Cluster: RNA-binding protein Puf1; n=6; Plasmodi...    34   3.3  

>UniRef50_Q8ISI8 Cluster: RNA-binding protein Puf1; n=6;
           Plasmodium|Rep: RNA-binding protein Puf1 - Plasmodium
           falciparum
          Length = 1894

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 21/83 (25%), Positives = 31/83 (37%)
 Frame = +3

Query: 252 YYDDTKKSRHVINVGSSTGNRCRINLANMGTL**YTGDEHTRHNNSKXXXXXXXXXXCQN 431
           YY D   + + IN   S  N     + N  T+  YTG  +  +NN+             N
Sbjct: 575 YYHDNMHNLYPINNIPSNYNSTENKILNCNTIIPYTGTNNNNNNNNNNNNNNNNNNNNNN 634

Query: 432 NKRQVYLRNKNVQFTN*IQLNSN 500
           N       N N+   N +  N+N
Sbjct: 635 NNNNNNNNNNNILSKNIVPYNAN 657


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,263,352
Number of Sequences: 1657284
Number of extensions: 9630767
Number of successful extensions: 15724
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15712
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)