Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021160
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   6.9  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 189  IYIHQIVLH*SEVNHSYNTLGYYDDTKKSRHVIN 290
            ++IH +    S + HSY T G+  DT  S  VIN
Sbjct: 1495 LFIHYLSSLLSSMQHSYETNGHSSDT-HSLFVIN 1527


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 337 WAHSNSTRATNILGTITAN 393
           W  SNST  +N+  TIT N
Sbjct: 929 WNSSNSTIVSNVTATITGN 947


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 57  NQVTNGFRVDLLKTSNSTKHYPCPSHIPR*T*NYYIIRMCDGC*IYIHQIVLH*SEVNHS 236
           N++T G    L+       +YPCP +I +     Y+I++     +YI       S +N  
Sbjct: 222 NKITKGEHSLLVPEELYRSNYPCPQNIDQ---FLYMIKVLSAPCLYIETFSFPISTINQL 278

Query: 237 YNTLG 251
           +   G
Sbjct: 279 FKAHG 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,120
Number of Sequences: 5004
Number of extensions: 43628
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)