Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021160
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033712-1|AAH33712.1|  415|Homo sapiens TBC1D2B protein protein.      31   4.5  
AK000173-1|BAA90990.1|  312|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AB028978-1|BAA83007.1|  868|Homo sapiens KIAA1055 protein protein.     31   4.5  

>BC033712-1|AAH33712.1|  415|Homo sapiens TBC1D2B protein protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  LSDQILKRNQVTNGFRVDLLKTSNSTKHYPCPS 131
           L   + K+N  +    +DLL+T  + KHY CP+
Sbjct: 148 LQKALEKQNPASKQIELDLLRTLPNNKHYSCPT 180


>AK000173-1|BAA90990.1|  312|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20166 fis, clone COL09511. ).
          Length = 312

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  LSDQILKRNQVTNGFRVDLLKTSNSTKHYPCPS 131
           L   + K+N  +    +DLL+T  + KHY CP+
Sbjct: 148 LQKALEKQNPASKQIELDLLRTLPNNKHYSCPT 180


>AB028978-1|BAA83007.1|  868|Homo sapiens KIAA1055 protein protein.
          Length = 868

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  LSDQILKRNQVTNGFRVDLLKTSNSTKHYPCPS 131
           L   + K+N  +    +DLL+T  + KHY CP+
Sbjct: 650 LQKALEKQNPASKQIELDLLRTLPNNKHYSCPT 682


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,985,762
Number of Sequences: 237096
Number of extensions: 1299591
Number of successful extensions: 1796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)