Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021159
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1105 + 11672118-11673245                                         28   7.9  
04_01_0067 - 673381-673387,675388-678131                               28   7.9  
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    28   7.9  
02_03_0194 - 16215032-16215177,16215322-16215393,16215518-162155...    28   7.9  
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970           28   7.9  

>12_01_1105 + 11672118-11673245
          Length = 375

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 405 CQDASIGVPHACPGVLGVDLGSTWFSEIPDY--TGCFP 298
           C+D   G+P++CP    +D+ +T+ +    +  T  FP
Sbjct: 326 CEDHDDGIPYSCPTTNTMDIATTYNAGFSQFAPTSLFP 363


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 359 WESISVARGFQKFRITLAVFHRKNPGY 279
           W S+S + GF K  IT  +    NP Y
Sbjct: 244 WASVSTSGGFHKIDITEQILRSANPTY 270


>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 481 LSTFKASLCCPGLSDLDEPGVKRFALSR 398
           L+   +S  C GLSD+DE G+ R  L R
Sbjct: 358 LAPANSSNICVGLSDIDENGIIRMMLCR 385


>02_03_0194 -
           16215032-16215177,16215322-16215393,16215518-16215593,
           16215984-16216074,16216188-16216258,16216344-16216506,
           16218841-16219065,16219206-16219507,16219551-16219680,
           16219783-16220045
          Length = 512

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 438 ISMNQVSKDSPCQDASIGVPHACPGVLGVDLGST 337
           +  NQVS D     A+  V   C   LG DLGS+
Sbjct: 211 LQYNQVSGDGQTTPANASVSFGCGAKLGGDLGSS 244


>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
          Length = 580

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -1

Query: 407 LVKTLLLVCHTPVQVSW----ESISVARGFQKFRITLAVFHRKNPGYSPEGRARRTII*T 240
           +  ++L+   T V   W     ++ +A     F +   ++  + PG SP  R  + ++ +
Sbjct: 197 VASSVLVYVQTHVGWGWGFGIPAVVMAVAVASFFVGTPLYRHQRPGGSPLTRIAQVLVAS 256

Query: 239 PKKWGV 222
            +KWGV
Sbjct: 257 ARKWGV 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,738
Number of Sequences: 37544
Number of extensions: 373930
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)