Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021159
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   4.6  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              29   4.6  
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)              28   6.1  
SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)              28   6.1  
SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)               28   6.1  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   8.0  
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 386  VCHTPVQVSWESISVARGFQKFRITLAVFHRKNPGY 279
            +  T V + W  ++++  FQ +R+  ++ HR N  Y
Sbjct: 1257 ISKTSVTLDWIPLNISSKFQGYRVYYSLLHRGNVSY 1292


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 1   RPRAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
           R RA   F A QLK  +  F A  Y  +V +     E       L++SE++ K+WF+N
Sbjct: 544 RKRARTAFSAEQLKKLEKRFQANHY--IVGE-----ERQKIAKDLDLSEAQVKVWFQN 594


>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
          Length = 389

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 1   RPRAPR--FFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
           +PR PR  +  A    + + G   +R++  V KY ++ + H   + L +++++ K+WF+N
Sbjct: 308 KPRKPRRPWTRAVFSNLQRKGL-EKRFQ--VQKYLTKADRHQLASMLGLTDNQVKVWFQN 364


>SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
          Length = 207

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 85  VSKYASQ*EEHNRENRLEISESERKLWFKN 174
           V KY ++ + H   + L +S+++ K+WF+N
Sbjct: 152 VQKYLTKADRHQLASMLGLSDNQVKVWFQN 181


>SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 85  VSKYASQ*EEHNRENRLEISESERKLWFKN 174
           V KY ++ + H   + L +S+++ K+WF+N
Sbjct: 101 VQKYLTKADRHQLASMLGLSDNQVKVWFQN 130


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 457  TVKL*RSTKF*KSLVSFSAKVNRQPPFFIFLL*SRPL*IKFSKFLDFFECVVIKELILNS 636
            TVKL +  KF + ++SF+  + R  P+ + +  S    + F  F      V   +L++ S
Sbjct: 1446 TVKLLKLLKFNEKIISFTLVIKRSKPYLLSI--SFLFVVVFMAFAQLGNLVFGNDLLIYS 1503

Query: 637  VLNNQFI 657
             +   F+
Sbjct: 1504 TMIKSFV 1510


>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 252 RSSSPTFWTIPRIFPVENSQCNPEFLKTTCY 344
           R +  T  +I  IF   N Q NP F++  CY
Sbjct: 335 RHTDRTLTSIKSIFKQSNVQANPIFMRVWCY 365


>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 496 KIFKILSTFKASLCCPGLSDLDE 428
           +++ ++  +K +LCC  +SD+DE
Sbjct: 347 RVYGVVCIYKRTLCCVDISDVDE 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,472,679
Number of Sequences: 59808
Number of extensions: 454891
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)