Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021159
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52810-1|CAB57215.1| 67|Caenorhabditis elegans protein ( Caeno... 29 3.1
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 29 3.1
U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective phary... 29 4.1
AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein. 29 4.1
X52811-1|CAB57217.1| 60|Caenorhabditis elegans protein ( Caeno... 28 5.4
U49944-3|AAM51525.1| 341|Caenorhabditis elegans Mesodermal line... 28 5.4
AC024847-9|AAR30201.1| 147|Caenorhabditis elegans C.elegans hom... 28 5.4
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 7.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 7.1
>X52810-1|CAB57215.1| 67|Caenorhabditis elegans protein (
Caenorhabditis elegansceh-1 gene, unknown homeobox. ).
Length = 67
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
K S+Y S E N +L++SE++ K+WF+N
Sbjct: 19 KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
K S+Y S E N +L++SE++ K+WF+N
Sbjct: 19 KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51
>U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective pharynx
development protein2 protein.
Length = 225
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 7 RAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
++P+ Q++ T A +K KY S E L +SE + K WF+N
Sbjct: 130 KSPQKRKGGQIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 185
>AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein.
Length = 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 7 RAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
++P+ Q++ T A +K KY S E L +SE + K WF+N
Sbjct: 75 KSPQKRKGGQIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 130
>X52811-1|CAB57217.1| 60|Caenorhabditis elegans protein (
Caenorhabditis elegansceh-9 gene, unknown homeobox. ).
Length = 60
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 91 KYASQ*EEHNRENRLEISESERKLWFKN 174
KY S + RL+++E++ K+WF+N
Sbjct: 24 KYLSSSDRSELAKRLDVTETQVKIWFQN 51
>U49944-3|AAM51525.1| 341|Caenorhabditis elegans Mesodermal lineage
specificationprotein 2 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 91 KYASQ*EEHNRENRLEISESERKLWFKN 174
+Y S E N +L ++E++ K+WF+N
Sbjct: 224 RYLSSQERSNLAQKLHLTETQVKIWFQN 251
>AC024847-9|AAR30201.1| 147|Caenorhabditis elegans C.elegans
homeobox protein 9 protein.
Length = 147
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 91 KYASQ*EEHNRENRLEISESERKLWFKN 174
KY S + RL+++E++ K+WF+N
Sbjct: 93 KYLSSSDRSELAKRLDVTETQVKIWFQN 120
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 540 KKGGLSIYFS*K*HQRFSKFCRPLKLHCVVPGCLISMNQVSK 415
K+ G++ + + F ++C P L+ V PG LI ++ +SK
Sbjct: 96 KENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 137
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 540 KKGGLSIYFS*K*HQRFSKFCRPLKLHCVVPGCLISMNQVSK 415
K+ G++ + + F ++C P L+ V PG LI ++ +SK
Sbjct: 98 KENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 139
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 228 PLFWGLNNRSSSPTFWTIPRIFPVENSQCNP-EFLKTTCYRDRLPG 362
P F+ N+S +P + R F V+ + NP E++ T R L G
Sbjct: 106 PEFFNGKNKSKTPDVYVAYRNFMVDTYRLNPFEYVSATACRRNLAG 151
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 228 PLFWGLNNRSSSPTFWTIPRIFPVENSQCNP-EFLKTTCYRDRLPG 362
P F+ N+S +P + R F V+ + NP E++ T R L G
Sbjct: 106 PEFFNGKNKSKTPDVYVAYRNFMVDTYRLNPFEYVSATACRRNLAG 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,939
Number of Sequences: 27780
Number of extensions: 351550
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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