Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021159
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.67 
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   2.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.7  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.2  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 76  KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
           K   ++Y S  E  N    L ++E++ K+WF+N
Sbjct: 26  KFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 58


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +1

Query: 31  PQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 174
           P+   T     +   K    +Y +  E     + L ++E++ K+WF+N
Sbjct: 12  PRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +1

Query: 589 LDFFECVVIKELI--LNS 636
           LD F CVV++E I  LNS
Sbjct: 609 LDMFNCVVVEETIPSLNS 626


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 88  SKYASQ*EEHNRENRLEISESERKLWFKN 174
           ++Y ++         L ++E++ K+WF+N
Sbjct: 42  NRYLTERRRQQLSRDLGLTEAQIKIWFQN 70


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 88  SKYASQ*EEHNRENRLEISESERKLWFKN 174
           ++Y ++         L ++E++ K+WF+N
Sbjct: 42  NRYLTERRRQQLSRDLGLNEAQIKIWFQN 70


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 511 AKVNRQPPFFIF 546
           AKVNRQP +F +
Sbjct: 429 AKVNRQPVWFYY 440


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 511 AKVNRQPPFFIF 546
           AKVNRQP +F +
Sbjct: 429 AKVNRQPVWFYY 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,165
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)