Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021158
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    29   0.92 
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   1.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.5  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.6  

>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 571 FTSSKSDRPTQDVPRGMGAEHHELVAGTPRDAPRRRHDGIPEDRS 705
           F + KS  PT   P  +GAE  E  +   +     + +G  E RS
Sbjct: 393 FAAPKSSFPTSSTPASVGAEKSEETSNGNKSEQEEKENGNDETRS 437


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 367 LARNLNCSGFSFLTSCCITFLYNLI 293
           LA  ++C+ +SF  SC + F+ N I
Sbjct: 388 LADTVSCAAYSFAVSCALLFVMNYI 412


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 212 SKSCFPVVVCWIANSSSASIVVTRTFICFPPATILIVMITHT 87
           S SC P  V  +  S S S        C PP TILIV +  T
Sbjct: 167 STSCNPATVLIVTTSGSTSTS------CPPPTTILIVTVPTT 202


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 496 ASNTEVSGGQYISSDKIAF 440
           ASNT V+G   +S DKI F
Sbjct: 109 ASNTSVAGSDSVSRDKIPF 127


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 174 ELEFRVHRRHADVHLFSSGNHFDSYDHT-HTADKITSTLCIIF 49
           E++ +V+   ADVH     NHF ++D + H        LC+ F
Sbjct: 263 EIQAKVNDASADVHEPFVYNHFRNFDASMHVNSTGLEDLCLTF 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,789
Number of Sequences: 5004
Number of extensions: 62658
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)