Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021158
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 107 1e-23
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09) 104 7e-23
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 53 2e-07
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16) 44 1e-04
SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_31348| Best HMM Match : ERM (HMM E-Value=0) 33 0.18
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 33 0.32
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2) 32 0.56
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 30 2.3
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 29 4.0
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 29 5.3
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 7.0
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 7.0
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25) 28 9.2
SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_44214| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 107 bits (256), Expect = 1e-23
Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Frame = +3
Query: 306 KKVMQQDVKKENPLQFKFRAKFYHEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETS 485
K VM QDVKKE PLQFKFR KF+ EDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+
Sbjct: 3 KAVMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETT 62
Query: 486 VLLASYAVKPD----TENTIPLCTGRDSWPMTVYFLKE*PTNTRCPARNGSRASRTGGRN 653
VLLASY + T+ + L P V +T + R +
Sbjct: 63 VLLASYMCQAKHGEYTDESAALIKDEKLLPDRVL-----DQHTLSKEQWDERII-LWWKE 116
Query: 654 TARCSAKTP*WNT*RSLKDLEMYGVNYFEI 743
R + + + +DLEMYGVNYF+I
Sbjct: 117 HGRMAKEDAVIEYLKITQDLEMYGVNYFQI 146
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = +2
Query: 509 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHREMLREDAMME 688
QA+HGE+ + +++LLP RV DQH +S+E+W++ I WW+EH M +EDA++E
Sbjct: 71 QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQWDERIILWWKEHGRMAKEDAVIE 128
Query: 689 YLKIAQ 706
YLKI Q
Sbjct: 129 YLKITQ 134
>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
Length = 118
Score = 104 bits (250), Expect = 7e-23
Identities = 45/64 (70%), Positives = 56/64 (87%)
Frame = +3
Query: 312 VMQQDVKKENPLQFKFRAKFYHEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 491
VM QDVKKE PLQFKFR KF+ EDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+VL
Sbjct: 1 VMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETTVL 60
Query: 492 LASY 503
LASY
Sbjct: 61 LASY 64
Score = 57.2 bits (132), Expect = 1e-08
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 509 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHREM 664
QA+HGE+ + +++LLP RV DQH +S+E+W++ I WW+EH M
Sbjct: 67 QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQWDERIILWWKEHGRM 116
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 53.2 bits (122), Expect = 2e-07
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Frame = +3
Query: 255 GLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAKFYHEDVADELIQEITLKLF 425
GLQY KGD W+ L K V +Q + + KFR K++ + A L +EI L+
Sbjct: 626 GLQYR-KKGDDWWLDLAKPVAKQLSNHGRIAAVVTLKFRVKYFVCN-AYSLQEEIARYLY 683
Query: 426 YLQVKNAILSDEIYCPPETSVLLASYAVKPD---TENTIPLCTGRDSWPMTVYFLKE*PT 596
YLQ+K +L+ + C + +V+LASY + D T +I + + +W M +KE T
Sbjct: 684 YLQLKKNVLAGLLLCDEQAAVVLASYIAQGDFAYTPISIKVVSANGNWQM----IKELHT 739
Query: 597 NTR 605
N R
Sbjct: 740 NLR 742
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 GLQYTDSK-GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYHEDVADELIQEITLKLFYL 431
GL+Y D K G W++ + + +Q K PL F F KFY E+ L ++IT F L
Sbjct: 50 GLRYIDEKDGQFNWLEGDRSIKRQMGKA--PLHFYFAVKFYPENPTT-LREDITRYQFVL 106
Query: 432 QVKNAILSDEIYCPPETSVLLASYAVKPDTENTIP 536
Q++ +L I C LLASY ++ + + P
Sbjct: 107 QLREDLLKGRIQCSNPIHALLASYVMQAELGDLHP 141
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 139 VRVTTMDAELEFAIQQTTTGKQLFDQIVKTIGLRE 243
V+V +D++ E I +TT G LFDQ+ IGL E
Sbjct: 11 VQVAGLDSDYECPIDKTTKGDHLFDQVCDHIGLAE 45
>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
Length = 573
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +3
Query: 357 FRAKFYHEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVKPD 518
FR K+Y E++ L Q+ T L+YLQ++ +L I+ ET++LLASYA++ +
Sbjct: 297 FRVKYYVENIC-LLQQQSTRHLYYLQLRKDVLEGGIFVHEETAMLLASYALQAE 349
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 509 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHREMLREDAMME 688
QA G++N ++HG + + LPQR K++ ++ + H + A +E
Sbjct: 347 QAEVGDYNQSVHGNDYFVPEHYLPQRAI--AKLTASYIRNTLPQLHKAHTGISDAQAEIE 404
Query: 689 YLKIAQ 706
YLK AQ
Sbjct: 405 YLKEAQ 410
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 70 CDLIRCVCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQIVKTIGLREVW 249
C I + IT + G K +NV V L + T TG+ L++ I +GL E
Sbjct: 96 CHSIMLLLSYITTHIGDGDKLINV-VLLNGERLNVRVLSTATGQDLYNTISDHLGLSETI 154
Query: 250 F 252
F
Sbjct: 155 F 155
>SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 181 QQTTTGKQLFDQIVKTIGLREVWF--LVFSTPT 273
+Q+ G +LFD +V+T+G+RE W+ L F PT
Sbjct: 26 KQSAKGSELFDLVVRTLGVRETWYFGLQFEYPT 58
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 375 HEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVKPDTENTIPLCTG 548
H A + T FYLQ++ +L +YC E ++ L A++ +T + P G
Sbjct: 410 HTSTARRITNHKTKHQFYLQLRKDLLDCRLYCHEEAALTLGGLALQAETGDYTPALGG 467
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +1
Query: 124 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQIVKTIGLREVWFLVFSTPTPRATSLG 294
G++M + +L+ I+ TT +QL++Q++K IG+ + F + + ++G
Sbjct: 278 GRRMVSVIVLNGQKLQMMIETNTTTQQLYEQVIKYIGIPDKIFFGLAQQKAQGNAIG 334
>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
Length = 665
Score = 33.5 bits (73), Expect = 0.18
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 584 RVTDQHKMSREEWEQSITNWWQEHREMLRE 673
+V +Q++M+ WE+ IT+W+ EH + R+
Sbjct: 12 QVIEQYQMTPAMWEERITSWYAEHHGLTRQ 41
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 32.7 bits (71), Expect = 0.32
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 219 CEDDRPPRGV--VLGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYHEDVA 389
C+ PR GLQY D + G+ W++L+K + Q K +QF R +
Sbjct: 51 CDHTDVPRDARRYFGLQYVDRNDGETNWLELHKPIYGQQKDKTLSVQFVVRVFPLNPLRM 110
Query: 390 DELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY 503
+ ++Q L LQ+K+ + ++ + LL SY
Sbjct: 111 EPIVQRWIL----LQMKDLLSRGKVKVSLQKHALLDSY 144
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +3
Query: 258 LQYTDSKGDLT-WIKLYKKVMQQDVKKENPLQFKFRAKFYHEDVADELIQ--EITLKLFY 428
++ D KG W++LY+K Q+ ++ + KFRAK H D+ ++Q E K
Sbjct: 394 MENVDKKGFFQKWLELYEKKYQEWSEENFDSKDKFRAK--HNDLYQSIVQQAEKNYKTNE 451
Query: 429 LQVKNAILSDEIYCPPETSVLLASYAVKPDTENTIPLCTG 548
L + N +S+ S+ L A T TI + G
Sbjct: 452 LPMINNYVSEASLNQASMSIALVFAAEAYHTRGTIRVVVG 491
>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
Length = 445
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 459 EIYCPPETSVLLASYAVKPDTENTIPLCTG-RDSWPMTVYFLKE 587
EIY E VLL Y V T+ LC G +S+P+TV + E
Sbjct: 82 EIYVKEEEEVLLPYYKVNEKVSLTLLLCRGISESYPITVIYDNE 125
>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 31.5 bits (68), Expect = 0.75
Identities = 26/84 (30%), Positives = 36/84 (42%)
Frame = -1
Query: 706 LSDLQVFHHGVFAEHLAVFLPPVRDALLPFLAGHLVLVGHSLRK*TVIGQESRPVQSGIV 527
L D Q VF + L PVR +P L +VG LRK VI + P+ + +
Sbjct: 700 LRDAQDIQLHVFCDASETRLAPVRTLTIPRLELQAAVVGTRLRK-KVINEIDLPINAVHL 758
Query: 526 FSVSGLTAYEASNTEVSGGQYISS 455
+S S T NT Y+S+
Sbjct: 759 WSDSKTTLQYIVNTTRRFSTYVSN 782
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 165 FRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCIIFLKGGSLKP 25
F V DVHL +G+ + + D+ ST+C + G S+ P
Sbjct: 935 FTVCESKFDVHLMCAGSSDNFVPKLPSCDRFVSTICCVSASGTSMPP 981
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 255 GLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 368
GL Y + G TW++L K+V+ ++ + +PL F +
Sbjct: 50 GLSYAEEGSGAQTWLRLDKRVLDHELPRHDPLILLFAVR 88
>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 243 GVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 344
G V +Y++ K D TW +Y+K + + V ++ P
Sbjct: 22 GSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQPP 55
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 696 FRYSIMASS-RSISRCSCHQFVMLCSHSSRDILCWSVTL*GSKRSLARNPGPCRAGLCSP 520
F SI +SS + S+C+ Q V +S+ D LC + G R + +P C G CS
Sbjct: 219 FSESIDSSSCKPCSKCAVGQMVERACNSTHDTLCGDCSP-GFYRDFSVHPAVC--GQCSY 275
Query: 519 C 517
C
Sbjct: 276 C 276
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 736 K*LTPYISRSLSDLQVFHHGVFAEHLAVFLPPVRDALLPFLAGHLVLVGHSLR 578
K LT L L V HH E++ F P+RD L FL + + +S+R
Sbjct: 40 KELTEKEREELLKLLVNHHKALLENVFCFEDPLRDKELDFLTNIVHYLSNSVR 92
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 596 QHKMSREEWEQSITNWWQEHREMLREDAMMEYLKIAQGPGDVRRQLLR 739
+++ E+W++ T W +H + EY K Q + ++QLL+
Sbjct: 134 KYQKEYEQWKEQYTQWQAQHANHPDQKQFQEYQKQMQTWHEQQQQLLQ 181
>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
Length = 419
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 488 VAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREE 619
VA GQ HG HN ++GP F N+ L +V+ ++ + E
Sbjct: 352 VADLPNGQLHHGNHN--INGPLFHGNNNDLNGQVSQRNNYNYSE 393
>SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 121 GGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQIVKTIG 234
GGK N RVT+ +E E +QQ + + +KT G
Sbjct: 26 GGKPGNTRVTSSKSEFEKLVQQLESATVRIESRLKTPG 63
>SB_44214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 572 LLPQRVTDQHKMSREEWEQSITNWWQEHREMLREDAMMEYLKI 700
L+P + Q MS +EW+++I + +H + +A + +LKI
Sbjct: 7 LIPHDLVKQ--MSPDEWKRAIVAQFNKHPGRTKSEAKISFLKI 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,092,332
Number of Sequences: 59808
Number of extensions: 519058
Number of successful extensions: 1934
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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