Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021158
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 528 CSPCLA*PRTKPATPRSPEGSIFHRIKSRFSPVDRRV 418
           C P LA P      P + +  +      RFSP  R V
Sbjct: 213 CPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 249


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 542 HGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRE 661
           H P +         R TD     R + E+S  N+  EH+E
Sbjct: 155 HHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKE 194


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 720 TSPGP*AIFRYSIMASSRSISRCS 649
           +S GP A    ++++  RS+S CS
Sbjct: 154 SSCGPGAAAAAALLSKRRSVSECS 177


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 195 GGRLLDRELEFRVHRRHADVH 133
           G R  +  L  R+HR    VH
Sbjct: 295 GSRFDEERLTLRIHRGRGSVH 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,931
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)