Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021158
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27410.1 68418.m03272 aminotransferase class IV family protei...    31   0.81 
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    30   1.9  
At4g01560.1 68417.m00202 brix domain-containing protein contains...    29   3.3  
At5g28570.1 68418.m03485 hypothetical protein                          29   4.3  
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    29   4.3  
At4g17483.1 68417.m02615 palmitoyl protein thioesterase family p...    29   4.3  
At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibit...    28   7.5  
At3g50100.1 68416.m05477 exonuclease family protein contains exo...    28   7.5  
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p...    27   9.9  
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu...    27   9.9  

>At5g27410.1 68418.m03272 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 559

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +3

Query: 198 EATLRSNCED-DRPPRGVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFY 374
           EATLRS C+D + P +  +L  +      D  W   + + + +     +P ++       
Sbjct: 157 EATLRSLCDDLEIPFQASMLKWEAGPIPEDGLWAPWWYETLHKSTGFSSPQKYPQTFPLM 216

Query: 375 HEDVADELIQEITLKLFYLQVKNAILSDEIYCP----PETSVLLA 497
           H D+ ++ +    +   +++ K+++LS  +  P    PE + LLA
Sbjct: 217 HYDLLEQCLPLYNILRCHMKHKSSLLSSTLPPPSLPVPENAKLLA 261


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 88  VCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQIVKTIGL 237
           +C ++   +V G K +NV++  MD     ++   +TG+   + + KT+GL
Sbjct: 175 ICPVLERLVVDGTKGVNVKIPNMDVPNLRSLSFRSTGELRIELLRKTLGL 224


>At4g01560.1 68417.m00202 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 343

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 297 KLYKKVMQQDVKKENPLQFKFRAKFYHEDVADELIQEITLKLFYLQVKNAILSDEIYCPP 476
           K  K   +Q  +K+   Q K RA+   E  A EL +E   K+    ++N   SDE  C P
Sbjct: 44  KRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRP 103

Query: 477 ETSVLLA 497
           +   L A
Sbjct: 104 DDEELFA 110


>At5g28570.1 68418.m03485 hypothetical protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 306 YTT*SK*--GRPWSRCTEDQEPHLAE--ADRLHNLIEELLPGGRLLDREL 169
           YT+ SK   GRP+ RC   Q+ HL +   D ++  + + LP   ++D E+
Sbjct: 35  YTSASKTNPGRPFFRCPTKQDDHLFKWVEDGVYEKVADALPKFSIIDSEI 84


>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -2

Query: 258 DQEPHLAEADRLHNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSGNHFDSY 100
           DQEPH     R   +I     G   +D  LEFR     A V L  SG HFD +
Sbjct: 188 DQEPHSRLVTRSLQVIASTTKG---IDF-LEFRASEIAAAVALSVSGEHFDKF 236


>At4g17483.1 68417.m02615 palmitoyl protein thioesterase family
           protein
          Length = 300

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 416 ETLLSTGEKRDFIR*NILPSGDLGVAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTD 595
           E LL      DF++ +I PSG + + G +     H ++ P L+       +     R T+
Sbjct: 152 EALLKLEVYTDFVQDHIAPSGYIKIPGEISKYLEHSKYLPKLNNERPDERNSTFKDRFTN 211

Query: 596 QHKM 607
            H +
Sbjct: 212 LHNL 215


>At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 166

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 73  DLIRCVCVIITIKMVAGGKQMNVRVTTMDAELE 171
           D+ RC  + + +K V GG + N   T MD  L+
Sbjct: 117 DIFRCTDITMYLKDVVGGNRDNTSKTFMDMTLQ 149


>At3g50100.1 68416.m05477 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 406

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 667 EHLAVFLPPVRDALLPFLAGHLVLVGHSLRK 575
           E+ ++ +  +++ L PFL+   +LVGHSL +
Sbjct: 197 ENASLSVVDIQETLQPFLSTGTILVGHSLNR 227


>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
           protein
          Length = 304

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +2

Query: 422 LLSTGEKRDFIR*NILPSGDLGVAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTDQH 601
           LL T    DF++ +I PSG + +   ++    H ++ P ++       +     R T  H
Sbjct: 147 LLKTAVYTDFVQDHIAPSGYIKIPTDIKDYLEHSKYLPKINNERPNERNTTFKDRFTSLH 206

Query: 602 KM 607
            +
Sbjct: 207 NL 208


>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR4) identical
           to N-terminal partial sequence of xyloglucan
           endotransglycosylase-related protein XTR4 GI:1244754
           from [Arabidopsis thaliana]; similar to endoxyloglucan
           transferase [Arabidopsis thaliana] GI:5533311
          Length = 343

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 508 TAYEASNTEVSGGQYISSDKIAFFTCR*KSFNV 410
           T ++AS+   SGG+Y ++ K A F    KSF++
Sbjct: 197 TIWDASDWATSGGKYKANYKFAPFVAEFKSFSL 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,040
Number of Sequences: 28952
Number of extensions: 350396
Number of successful extensions: 1122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)