Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021157
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   131   7e-32
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   2.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   3.9  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    26   5.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.1  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   5.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   6.8  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    25   9.0  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.0  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  131 bits (317), Expect = 7e-32
 Identities = 63/124 (50%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +1

Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
           +KTGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA 
Sbjct: 47  SKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQ 106

Query: 436 GVHENRNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEME-NFWWARP 612
           G+H  +  EE+GA DQG+MFGYAT         L  L  + +    S    + +  W RP
Sbjct: 107 GLHYEKALEELGAGDQGIMFGYATDETPEKLP-LTILLAHKLNAAMSVARRDGSLPWLRP 165

Query: 613 DSKT 624
           D+KT
Sbjct: 166 DTKT 169



 Score = 78.2 bits (184), Expect = 9e-16
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +2

Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET  K
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASK 48


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 406 LDQQSPNIAAGVHENRND-EEVGARDQG 486
           LDQ+ P +  G  ++RND +  G RD+G
Sbjct: 63  LDQEEPMVEIGSKKSRNDNDSEGIRDKG 90


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +1

Query: 346 IGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGARDQGLMFGYATVRQKNA 525
           +GY  +   F      V+  +D    N    +   +N   +   D G++F Y+ +R +NA
Sbjct: 315 VGYRTNPLSFTCGCEGVIHYMDADFVNYRGEITTIKNAISIHEEDDGVLFKYSDLRDRNA 374


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 35  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 205
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 433 AGVHENRNDEEVGARDQGLMFGYATVRQK 519
           A + E+   E +  RD G+ FGYA V+++
Sbjct: 46  ANISEDAIQELLRYRDSGVYFGYAMVQKR 74


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 402 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 277
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 298 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 417
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 187 LVAHFVWMTLANRFRCEQKY*SIFHII 107
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 433 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 314
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 531 TACILLSHCGITEHQALVSCPNFLVI 454
           +AC++L H G+ ++  L++   + VI
Sbjct: 301 SACLMLRHLGLKDYADLINAATYSVI 326


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 114 WKMDQYFCSHRNLLARVIQTKC 179
           W + + F S+R L A  I+T C
Sbjct: 27  WNISKTFLSYRTLTALAIETSC 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,636
Number of Sequences: 5004
Number of extensions: 62510
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)