Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021157
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 107 9e-24
01_02_0051 - 10655867-10657057 104 5e-23
01_03_0090 - 12347165-12348349 102 3e-22
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 29 4.0
12_02_0655 + 21588662-21589051 28 7.0
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 7.0
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 7.0
05_04_0035 + 17378541-17381276 27 9.2
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 9.2
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 27 9.2
>05_01_0264 + 2030080-2031270
Length = 396
Score = 107 bits (256), Expect = 9e-24
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA
Sbjct: 49 TKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQ 108
Query: 436 GVHEN--RNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWAR 609
GVH + + EE+GA DQG MFGYAT L T +L + W R
Sbjct: 109 GVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLR 168
Query: 610 PDSKT 624
PD KT
Sbjct: 169 PDGKT 173
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET K
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTK 50
>01_02_0051 - 10655867-10657057
Length = 396
Score = 104 bits (250), Expect = 5e-23
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA
Sbjct: 49 TKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQ 108
Query: 436 GVHEN--RNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWAR 609
GVH + + EE+GA DQG MFGYAT L T +L + W R
Sbjct: 109 GVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLR 168
Query: 610 PDSKT 624
PD KT
Sbjct: 169 PDGKT 173
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = +2
Query: 113 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET K
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTK 50
>01_03_0090 - 12347165-12348349
Length = 394
Score = 102 bits (244), Expect = 3e-22
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA
Sbjct: 48 TKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQ 107
Query: 436 GVHEN--RNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWAR 609
GVH + + EE+GA DQG MFGYAT L T +L + W R
Sbjct: 108 GVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLR 167
Query: 610 PDSKT 624
PD KT
Sbjct: 168 PDGKT 172
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET K
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTK 49
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 616 NLVL-PTKNSPFRLSSAIF*LSLCASTTVNGMHSSVSLWHNRTSSPGLVPQLPRHF 452
N+V+ PT +PFRL A F + + SV +W S+ G+ +LP F
Sbjct: 650 NIVVDPTWIAPFRLERASFPACMMGPQFPTWLQWSVDIWLLEISNTGIKDKLPDWF 705
>12_02_0655 + 21588662-21589051
Length = 129
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 79 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 237
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 547 ASTTVNGMHSSVSLWHNRTSSPGLVPQLPRHFCSHAPQ 434
+S+ +NG S+ +SS G + QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 578 ELCNFLIEFVCKHYSQRHAFFC 513
E+ +FL+ +H +QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
>05_04_0035 + 17378541-17381276
Length = 911
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 608 LAHQKFSISPELCNFLIEFVCKHYSQRHA 522
L +KF ++P CN L+E + KH + A
Sbjct: 316 LLDKKFRMTPATCNVLLETLFKHDKDKEA 344
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 116 EDGSVFLFTSESVGEGHPDKM---CDQISDAIL 205
+DGS +LFTS+ E HP M D+ S+ IL
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDIL 797
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -2
Query: 592 SPFR----LSSAIF*LSLCASTTVNGMHSSVSLWHNRT--SSPGLVP 470
SPFR LS + L+L ST M SSV WH R P LVP
Sbjct: 101 SPFRVRTPLSLVLAVLTLTPSTLKIPMPSSVDEWHERAMLEQPTLVP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,865,966
Number of Sequences: 37544
Number of extensions: 417321
Number of successful extensions: 1154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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