Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021157
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   3e-30
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   6e-18
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        85   6e-17
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             33   0.14 
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              33   0.14 
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.58 
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 31   0.77 
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               27   9.4  
SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)                27   9.4  

>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  150 bits (363), Expect = 1e-36
 Identities = 72/122 (59%), Positives = 88/122 (72%)
 Frame = +1

Query: 259 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 438
           KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA G
Sbjct: 5   KTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQG 64

Query: 439 VHENRNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWARPDS 618
           VH  R+DE++GA DQGLMFGYAT            L     ++L       +  W RPDS
Sbjct: 65  VHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDS 124

Query: 619 KT 624
           KT
Sbjct: 125 KT 126


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  143 bits (346), Expect = 1e-34
 Identities = 72/122 (59%), Positives = 84/122 (68%)
 Frame = +1

Query: 259 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 438
           KTGM+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA G
Sbjct: 74  KTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHG 133

Query: 439 VHENRNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWARPDS 618
           VH  R +E+VGA DQGLMFGYAT   +        L     +KL          WARPDS
Sbjct: 134 VHVGREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDS 193

Query: 619 KT 624
           KT
Sbjct: 194 KT 195



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = +2

Query: 125 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET  K
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAK 74


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  128 bits (310), Expect = 3e-30
 Identities = 66/123 (53%), Positives = 79/123 (64%)
 Frame = +1

Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
           TKTG+VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q   IA 
Sbjct: 94  TKTGLVLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQ 153

Query: 436 GVHENRNDEEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEMENFWWARPD 615
            VH NR D+E+GA DQGLMFGYAT   +        L      +L    + +   W  PD
Sbjct: 154 TVHLNRRDDEIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPD 213

Query: 616 SKT 624
            KT
Sbjct: 214 GKT 216



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 39/52 (75%), Positives = 40/52 (76%)
 Frame = +2

Query: 107 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET  K
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATK 95


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 39/46 (84%), Positives = 42/46 (91%)
 Frame = +2

Query: 125 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE+  K
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAK 54



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = +1

Query: 259 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 369
           KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 54  KTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +2

Query: 125 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 247
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 9   RGTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 143
           RG VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 416 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 483 GLDVRLCHSETEECMPLTVVLAHKLNQKIAELRRNG 590
           GL      +ET+  MP  V  AH+L ++ +ELRRNG
Sbjct: 16  GLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNG 51



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 460 EEVGARDQGLMFGYATVRQKNACR*L*CLHTNSIRKLQSSGEME-NFWWARPDSKT 624
           E+ GA DQGLMFGYAT  + ++       + + + + QS         W RPD+K+
Sbjct: 8   EDQGAGDQGLMFGYAT-NETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKS 62


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 9   RGTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 143
           RG VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 70  RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 318 LIIHVSFGCDFATQ--KHHTGFSLVSHATFASGS*FRCASRIASLIWSHILSG 166
           L  H++F C       + H   S +S +  A  + FRC+ R  S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 283 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 384
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 517 SVSLWHNRTSSPGLVPQLPRHFCSHAPQQQCLVIVGL 407
           S++   N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 95  SLATLGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
 Frame = -2

Query: 625 VFWNLVLPTKNSP---FRLSSAIF*LSLCA---STTVNGMHSS-VSLWHNRTSSPGLVPQ 467
           + WNL    K +P   F   SA+   +      +  + G +S  + LW NR+S    V +
Sbjct: 278 LIWNLKF-AKTTPEYIFHCQSAVMSATFAKFHPNLIIGGTYSGQIVLWDNRSSKRTPVQR 336

Query: 466 LPRHFCSHAPQQQCLVIVGLVRASHCMS 383
            P    +H     C+ +VG   A + +S
Sbjct: 337 TPLSATAHTHPVYCVNVVGTQNAHNLIS 364


>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 155 GEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLKPVWCFCVAKSHPKL 304
           G G  D++ +     +L A +N       A  T+ KPV  + +A  HP++
Sbjct: 391 GLGRLDRLVEAFVYTVLGAQVNVRSSIANAINTETKPVGAYNMAGGHPRV 440


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 56  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 232
           MP      G +K N  + D  D   +L   +S+    + D++C   +  I  AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 56  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 232
           MP  +   G +K N  + D  D   +L    S+    + D++C   +  I  AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300


>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 466 LPRHFCSHAPQQQCLVIVGLVRASHCMSCNQSL-WTNHHN 350
           L R FC      +C+ I+G  R S+      +  W  HH+
Sbjct: 106 LSRLFCERLDSNECVFIIGAQRFSNYTGYAHTFKWAGHHD 145


>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 339 DRFAHNFLIIHVSFGCDFATQKHHTGFSLV 250
           D F  NF++I +   CDF T K+ +G  LV
Sbjct: 208 DSFITNFVVIVLLLSCDFWTVKNVSGRLLV 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,164,826
Number of Sequences: 59808
Number of extensions: 500089
Number of successful extensions: 1498
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)