Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021156X
         (466 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 415 YTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVLA 287
           Y    E   +    V    EILQL  +L + + +   +SQ++A
Sbjct: 41  YEYPREQPIVAMFEVNNTPEILQLMSDLKQHQSDDPVLSQIIA 83


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 442 KEATEDLVGYTAAEEAKRLRAVNVKQEQE 356
           ++  EDLVG+     +  +   N KQ  E
Sbjct: 223 EDYVEDLVGHIEVNHSAPITTCNKKQHLE 251


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 424 GPPWPPFTVNANSF 465
           GPP  P+TV +N +
Sbjct: 122 GPPSHPYTVISNGY 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,192
Number of Sequences: 336
Number of extensions: 1284
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)