Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021156X
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   3.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    24   9.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    24   9.9  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 436  ATEDLVGYTAAEEAKRLRAVNVKQEQEILQL-RKELDEVRREL 311
            +T D   +   E  KR   +    E+++ Q  +K+LD +R+EL
Sbjct: 1592 STADFTTFVQKEWEKRREILQKDVEEQVAQSHQKQLDNIRKEL 1634


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 442 KEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 314
           K   E+     A E AKR     VK+E E    RK  +E +RE
Sbjct: 666 KREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKRE 708



 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 442 KEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 314
           K   E+     A E+AKR    N K+E E    R+  ++ +RE
Sbjct: 578 KREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKRE 620


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -1

Query: 400 EAKRLRAVNVKQEQEILQLRKELDEVRRELA 308
           E KRL++     ++E   L++++++++RELA
Sbjct: 354 EKKRLQSAIQPLQEENNSLKQQIEQLQRELA 384


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 406  AEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 290
            AEE   ++ ++ ++E EILQ    L ++    ++V   L
Sbjct: 1558 AEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESEL 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,718
Number of Sequences: 5004
Number of extensions: 18059
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)