Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021156X
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0674 - 10329933-10331537 31 0.35
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 31 0.60
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 1.1
05_03_0125 + 8738770-8739237,8739266-8739742 29 1.8
02_01_0529 - 3846489-3847268 29 2.4
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 28 3.2
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 4.3
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 28 4.3
06_03_1232 - 28583105-28583971 28 4.3
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191... 28 4.3
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671... 27 5.6
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138 27 5.6
04_04_0837 + 28547815-28547970,28548073-28548783 27 9.8
>03_02_0674 - 10329933-10331537
Length = 534
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 418 GYTAAEEAKRLRAVNVKQEQEIL-QLRKELDEVRRELARVSQVLAL 284
GY AEEAK+ R ++V ++ EIL Q +K++ + +R S V ++
Sbjct: 476 GYQEAEEAKKRRKIHVIEDPEILKQRQKKMHPILSLRSRASHVSSM 521
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = -1
Query: 409 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 290
AAEEA+RLR V +Q +E LR + EV RE A +VL
Sbjct: 110 AAEEAERLRGVVRRQRKE---LRARIAEVAREEAERKRVL 146
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 397 PLRLRCSPQGPPWPPFTV 450
PLR+ SP PPWPP T+
Sbjct: 12 PLRVALSPPLPPWPPATM 29
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = -1
Query: 418 GYTAAEEAKRLRAVNVKQEQEILQLRKELDEVR 320
GY AEEAK+ R ++V ++ ++L+ ++E ++R
Sbjct: 281 GYQDAEEAKKRRKIHVIEDPKMLKHKQEKMDIR 313
>02_01_0529 - 3846489-3847268
Length = 259
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 57 PHPVQHIRRQGD*TILPGSSACPPLAVVAFGAPXQAVPPXLQSERP 194
P PV + G P ++A PP A+V GAP VPP Q P
Sbjct: 7 PQPVMGVATGGSQAYPPPAAAYPPQAMVP-GAP-AVVPPGSQPSAP 50
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 406 AEEAKRLRAVNVKQEQEILQLRKELDEVRRELAR 305
AEE +RL+ N + E++I L K+ + +RRE R
Sbjct: 616 AEEVQRLKLKNTQLEEQINALPKKDERLRREDTR 649
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 409 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 290
A EEA+ +A+ + E ++ L KELDE ++ + + L
Sbjct: 499 AEEEAEAGKAIEQEFETQLSSLNKELDEAKQAMLELENKL 538
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 400 EAKRLRAVNVKQEQEILQLRKELDEVRRE 314
EAK+L+ N E +I +L+ E DE+R E
Sbjct: 136 EAKQLKDTNESLEDKIKELKAEKDELRDE 164
>06_03_1232 - 28583105-28583971
Length = 288
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 418 GYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVLALPTS 275
GY AEEAKR R + V Q + ++++ + R +R S V A T+
Sbjct: 232 GYQEAEEAKRRRTIQVIQAPD---RQRKMQAITRPRSRPSFVAAASTA 276
>01_06_1397 -
37017468-37017561,37017763-37017836,37019128-37019193,
37019543-37019623,37019735-37019943,37020096-37020192,
37020497-37020514,37020597-37020727,37021040-37021088,
37021450-37021539,37021616-37021721,37021815-37021885,
37021963-37022037,37022059-37022120,37022677-37022887,
37023599-37024069,37024387-37024719
Length = 745
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 6 GHASSFSPMSSVALMTVPHPVQHIRRQGD*TILPGSSACPPLAVVAFGAP 155
G A F PM A ++P P IR + P S CPPLA++ AP
Sbjct: 36 GEAEVF-PMKQGAEGSLPFPSNEIRISH---LSPTSERCPPLAILQTIAP 81
>12_02_1047 +
25666113-25666442,25666606-25666651,25667042-25667130,
25667291-25667493,25667807-25667949,25668286-25668332,
25668794-25668870,25668952-25668981,25669068-25669163,
25669489-25669591,25669959-25670041,25670204-25670326,
25670465-25670576,25670791-25670898,25671006-25671593
Length = 725
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 412 TAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELA 308
T + A+RLR + E+E +R DE+RRE+A
Sbjct: 34 TRSSVAQRLRPRGARTEEEAEIVRMRDDELRREMA 68
>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
Length = 275
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 449 TVKGGHGGPCGLHRSRRG*ETASGQRQAGAGDP 351
T + G GG R RRG + +RQ G G P
Sbjct: 126 TRESGSGGRAAAQRGRRGSTGPASRRQEGGGRP 158
>04_04_0837 + 28547815-28547970,28548073-28548783
Length = 288
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 403 EEAKRLRAVNVKQEQEILQLRKELDEVRRELAR 305
EE RLR N + +E+ + R+ D VRR ++R
Sbjct: 142 EENARLRRENARLARELARARRVCDGVRRLVSR 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,551
Number of Sequences: 37544
Number of extensions: 192448
Number of successful extensions: 671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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