Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021156X
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)                   31   0.62 
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)                31   0.62 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.1  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    29   2.5  
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    28   3.3  
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               28   3.3  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        27   5.8  
SB_32477| Best HMM Match : DUF593 (HMM E-Value=0.41)                   27   5.8  
SB_23188| Best HMM Match : UVR (HMM E-Value=4.2)                       27   5.8  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               27   7.7  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        27   7.7  

>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 216

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 409 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRELA-RVSQVLALPTS 275
           A E A R   +     +E  +LRK+LD+ +RELA +++Q+ AL  S
Sbjct: 10  ADEVASRATLMVTMLSEENAKLRKQLDDTKRELAQQLNQIQALKQS 55


>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 510

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 415 YTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 296
           Y A +EAKR +  + ++++E+  L ++  + RREL R  Q
Sbjct: 297 YEAEQEAKRQKLAHAERQRELYLLYQKQQQRRRELEREEQ 336


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 403  EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVS 299
            +E + L+  + +++QEIL L   ++E+   LAR+S
Sbjct: 1373 DENENLKESDARRQQEILDLENRINELENMLARIS 1407


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 388  LRAVNVKQEQEILQLRKELDEVRREL 311
            L A   +QE+EIL+L+++LDE R  L
Sbjct: 1046 LNAARKRQEEEILRLKQKLDESRLSL 1071


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 290
           E  KR+R    +++QE++  RK  +E+RRE  ++ + L
Sbjct: 413 EREKRMREDFERKKQELIAQRKLEEEIRREQEKIDREL 450


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = -1

Query: 418 GYTAAEEAKRLRAVNVKQEQEILQLRKELDEV-RRELARVSQV 293
           G  ++E+++++ + N K+E   +QLRKELD + ++E  RVS++
Sbjct: 376 GTGSSEKSQKVHSANWKEE---IQLRKELDCLNKQEQQRVSRI 415


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 409 AAEEAKRL--RAVNVKQEQEILQLRKELDEVRRELARVSQ 296
           AA EA +L  + + +++ QEI + R EL+  RREL R S+
Sbjct: 159 AAIEAAKLEQKMIALQRRQEIDRRRDELERERRELERSSE 198


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 394  KRLRAVNVKQEQEILQLRKELDEVRRE 314
            ++LR +N   EQE+ +L++ELD   +E
Sbjct: 2868 EKLRIINNTNEQEVEKLKRELDNTIQE 2894


>SB_32477| Best HMM Match : DUF593 (HMM E-Value=0.41)
          Length = 214

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 394 KRLRAVNVKQEQEILQLRKELDEVRRE 314
           ++LR +N   EQE+ +L++ELD   +E
Sbjct: 11  EKLRIINNTNEQEVEKLKRELDNTIQE 37


>SB_23188| Best HMM Match : UVR (HMM E-Value=4.2)
          Length = 168

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -1

Query: 409 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 314
           A  E+KRL A   +++ EIL LR EL+E R+E
Sbjct: 57  ALYESKRLLA---ERDTEILTLRNELEESRKE 85


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 292 APAKPSPTPF*LHRAPYEVAGSPA-PA*R*PLAVS*PLRLRCSPQGPPWPP 441
           APA P P P     AP   A  PA P    PL    P   + +PQ PP PP
Sbjct: 61  APAAPPP-PAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAPP 110


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 292 APAK--PSPTPF*LHRAPYEVAGSPAPA*R*PLAVS*PLRLRCSPQGPP 432
           APA+   +P P     AP   A +PAPA   P A + P  +R  P   P
Sbjct: 89  APAQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSP 137


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 290
           E+ K+ +      ++E+L+ RK+LD  R EL+  +Q L
Sbjct: 571 EDLKKSKEAQNLLQREVLENRKDLDLFREELSAKNQQL 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,966
Number of Sequences: 59808
Number of extensions: 177603
Number of successful extensions: 506
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)