Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021156X
         (466 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.43 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   2.3  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    23   4.0  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   5.3  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   5.3  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   9.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    22   9.2  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    22   9.2  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 415 YTAAEEAKRLRAVNVKQEQE--ILQLRK-ELDEVRRE 314
           Y   +EAKRL+   + ++QE  I++ RK E DEV +E
Sbjct: 239 YHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKE 275



 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 370 KQEQEILQLRKELDEVRRELARVSQVLA 287
           + E+E+ + R+E+  + +ELA + Q +A
Sbjct: 896 QMEEEMAKARREVQALAKELAAIHQSIA 923


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 412 TAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 296
           T  EE +  R +  K ++ I + + +LD+VRR + +  Q
Sbjct: 783 TLREELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQ 821


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 443 KGGHGGPCGLHRSRRG*ETASGQRQAGAGD 354
           +GG GG  G  R R G +   G    G GD
Sbjct: 72  RGGRGGGRGRGRGRGGRDGGGGFGGGGYGD 101


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 409 RCSPQGPPWPP 441
           RCSPQ  P PP
Sbjct: 6   RCSPQSAPSPP 16


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 409 RCSPQGPPWPP 441
           RCSPQ  P PP
Sbjct: 6   RCSPQSAPSPP 16


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 352 LQLRKELDEVRRELARVS 299
           LQLRKE  E RR++ +++
Sbjct: 695 LQLRKERTEERRKMFKIA 712


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 464 KELAFTVKGGHGGP 423
           ++L   VKG HGGP
Sbjct: 827 RQLITYVKGAHGGP 840


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 76  ICCTGCGT 53
           +CCT CGT
Sbjct: 175 LCCTNCGT 182


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,805
Number of Sequences: 2352
Number of extensions: 5628
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)