Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021156X
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45249.2 68414.m05192 ABA-responsive element-binding protein ...    32   0.22 
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    30   0.89 
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    29   1.5  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    29   2.0  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    29   2.0  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    28   3.6  
At2g46180.1 68415.m05742 intracellular protein transport protein...    28   3.6  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    27   6.2  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    27   8.3  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    27   8.3  
At2g27740.1 68415.m03362 expressed protein contains Pfam profile...    27   8.3  

>At1g45249.2 68414.m05192 ABA-responsive element-binding protein 1
           (AREB1) identical to ABA-responsive element binding
           protein 1 (AREB1) [Arabidopsis thaliana] GI:9967417
          Length = 416

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = -1

Query: 412 TAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQV 293
           +AA    R +A  V+ E E+ +L++E DE++R+ AR+ ++
Sbjct: 349 SAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEM 388


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/30 (36%), Positives = 24/30 (80%)
 Frame = -1

Query: 400 EAKRLRAVNVKQEQEILQLRKELDEVRREL 311
           +++ L++ NVK E+E+++LRK ++ ++ EL
Sbjct: 496 QSESLKSENVKLEKELVELRKAMEALKTEL 525


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 412 TAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 296
           TAA +  RLRA        I  L KELD ++R L++ S+
Sbjct: 351 TAARQNCRLRAAMNSTSSRIESLEKELDTMKRFLSKESE 389


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQ-EQEILQLRKELDEVRRELARVSQVLA 287
           +E K+++    K    E+++LR +LD  ++ELA+V+++ A
Sbjct: 282 QEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSA 321


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 403  EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQV 293
            +E K+      K E+ +  LRKELD +R +L++  ++
Sbjct: 955  DEVKQALDEKEKTEERLKVLRKELDALRNDLSKAEEI 991


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 289 LAPAKPSPTPF*LHRAPYEVAGSPAPA*R*PLAVS*P--LRLRCSPQGPPWPP 441
           L P  P P P    RAP      P    R PL    P  +R R  P+ PP PP
Sbjct: 23  LPPPPPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPPP 75


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 439 EATEDLVGYTAAEEAKRLRAVNVKQEQE--ILQLRKELDEVRRELARVSQVL 290
           ++TEDL  + ++ + ++      K++ E  + +L KEL+E RRE  +  Q L
Sbjct: 323 KSTEDLSRHLSSLDEEKAGTFPGKEDMEKSLQRLEKELEEARREKDKARQEL 374


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
           PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQEQEILQLRKE 335
           +EA++ R     QE+E+LQL+KE
Sbjct: 644 QEAEQFRQWKASQEKELLQLKKE 666


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQEQEILQLRKE 335
           +EA++ R     +E+E+LQLRKE
Sbjct: 639 QEAEQFRQWKASREKELLQLRKE 661


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 403 EEAKRLRAVNVKQEQEILQLRKE 335
           +EA++ R     +E+E+LQLRKE
Sbjct: 639 QEAEQFRQWKASREKELLQLRKE 661


>At2g27740.1 68415.m03362 expressed protein contains Pfam profile
           PF04949: Family of unknown function (DUF662)
          Length = 174

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 406 AEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 296
           AE  + L A+     +EI  +RK +D + REL  + Q
Sbjct: 81  AEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQ 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,638,737
Number of Sequences: 28952
Number of extensions: 120067
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)