Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021154
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    62   5e-11
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    27   1.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   3.9  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   6.9  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   9.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.1  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.1  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
 Frame = +2

Query: 254 INKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI- 430
           + K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 431 -HDKGHVYDVLKNWPETD-VRAIVVTD 505
            +D  ++   L  + ++D V  I++TD
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITD 156



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 514 ILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITID 630
           ILG+GD G  G+ I V K  L T   G+ P++ LPI +D
Sbjct: 160 ILGIGDQGVGGVLISVAKGHLMTLCAGLDPNRFLPIVLD 198


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
 Frame = -2

Query: 496 NNGTDVRLRPVLKNIVYMSLIVDRDEEAPWSAVHKPELLTGQANRRSVHNWHHFSHVIRD 317
           ++G+ +  +P+LK      L++   +  PW  + + + L  +       N +H +  IR 
Sbjct: 414 SSGSSLAKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFSNRNHAT--IRS 471

Query: 316 ETVEQMLIAVQEPH-KIDVLVNGFSYLSIESLHSSTCSSCVLTRGGNNPCMPKSDAL 149
               Q   +  + H   +  V     + I+SL S + S+   T   N+   P  D +
Sbjct: 472 ALFSQRYPSHSKRHIHFNDRVQQCIAVDIDSLPSDSESASYNTDDANSVVSPSKDGI 528


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 629 SIVMGRH*CGLMPPSAV*SASLPTGMPI--PHAPKSPRP 519
           S+ MG      +PPSA  +  LP GMP   P  P +P P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 352 HNWHHFSHVIRDETVEQMLIAVQEPHKIDVLVNGFSYLSIESLHSSTCSS 203
           H W  +SHVI        L  +     + +     S L+I  LHS+T  S
Sbjct: 224 HGWFDYSHVISRFNEVPALYVISGVILVSIAFFNVSGLAITKLHSATTRS 273


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 407 PRGLFITIHDKGHVYDVLKNWPETDVRA 490
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 307 EQMLIAVQEPHKIDVLVNGFSYLSIESLHSSTCSSC 200
           E   +  + PH+I   ++ FS + I  +    CS+C
Sbjct: 557 EDQTVLGELPHQIRGFLHNFSLMKISGMAYPQCSAC 592


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 164 GHTRVVTTTSQDARGAG*TMQALDRQI 244
           GH+++VTTT+ D  G+     +LD  I
Sbjct: 87  GHSKIVTTTTFDKNGSRFYTGSLDNTI 113


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 262 LVNGFSYLSIESLHSSTCSSCVLTRGGNNP--CMPKSDAL 149
           LVN F+Y   +  +   CS  V+ R G+    C P  +++
Sbjct: 720 LVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESM 759


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 64  RSPIIRYDHVPFRYTYTSVR 5
           R+P++RYD  P RY    +R
Sbjct: 99  RNPLVRYDVSPARYPTIGIR 118


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 630 VDSDGQTLMRLDASERGVEREFAHWD 553
           V SDG   +RLD   RG+ + F H D
Sbjct: 503 VSSDG---LRLDVPSRGLRKRFRHGD 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,523
Number of Sequences: 5004
Number of extensions: 61140
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)