Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021154
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_4037| Best HMM Match : rve (HMM E-Value=3.4) 29 4.1
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34) 27 9.6
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0) 27 9.6
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 27 9.6
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34) 27 9.6
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 136 bits (328), Expect = 2e-32
Identities = 56/85 (65%), Positives = 73/85 (85%)
Frame = +2
Query: 254 INKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIH 433
+ KYI LM LL+RNE LF+R + D E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IH
Sbjct: 116 LEKYIQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIH 175
Query: 434 DKGHVYDVLKNWPETDVRAIVVTDG 508
DKGH+ D++ NWP T+V+AIV+TDG
Sbjct: 176 DKGHIRDIVSNWPTTEVKAIVMTDG 200
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = +1
Query: 508 KRILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITID 630
+RILGLGDLG CGMGIPVGKLALYT GGI P CLP+ ID
Sbjct: 201 ERILGLGDLGCCGMGIPVGKLALYTVCGGIDPEGCLPVMID 241
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 129 GHGFYHRRASLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPL 257
G F +LGIHGLLPP V +QE Q + + R N L
Sbjct: 74 GLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDL 116
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 88 LSGLDHLKHPGLNKGMAFTIEER 156
+ G D ++ LNKG+AFT+EER
Sbjct: 60 IRGTDIMRDSHLNKGLAFTLEER 82
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 380 QKFGLVYRRPRGLFITIHDKGHVYDVLKNW------PETDVRAIVVTDGNVFWVLATWAH 541
+KF + R + F IH G V NW P D ++ + +V+A W
Sbjct: 598 EKFQIPEFRSQAHFSIIHYAGRVDYNCDNWLMKNQDPLNDNITSLMQGSSDTFVVALWKD 657
Query: 542 AGWASQWANSRSTP 583
A + SQ+ANS +P
Sbjct: 658 AEFVSQFANSGESP 671
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -1
Query: 605 CGLMPPSAV*SASLPTGMPIPHAPKSPRPRIRFRRLQQWHGRPSPASS*EHRI 447
CGL S + S P P P P +PRPR R G P+P S EH +
Sbjct: 1346 CGLCTTSPIPSTPRPRP-PTPPRPPTPRPRPPTPR----PGPPTPRPSGEHNL 1393
>SB_4037| Best HMM Match : rve (HMM E-Value=3.4)
Length = 390
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 322 RDETVEQMLIAVQEPHKIDVLVNGFSYLSIESLHSSTCSSCVL 194
R T + +V+E + L NG SY E LH SSC+L
Sbjct: 36 RSRTADVREHSVREQTGTNRLTNGNSYRVTEDLHCKEISSCLL 78
>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
Length = 512
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 174 GLLPPRVKTQEEQVELCKLSIDRYENPLTSTSIL---WGSWTAMSICS 308
GL+P R+ +E+ + K S+ + L +S + WG+WT+ S+CS
Sbjct: 180 GLVPTRL--HQEEGKHAKESLLKKSIVLCHSSAVDGGWGAWTSWSLCS 225
>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
Length = 663
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 416 LFITIHDKGHVYDVLKNWPE 475
L IT H+ GH+Y LK W +
Sbjct: 364 LIITHHEMGHIYYFLKYWDQ 383
>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 348 LCTLRRLAWPVRSSGLCTADQGASSSRSTIRDMYTM 455
+C R PVR+S + T ++ SSR+TI T+
Sbjct: 165 ICKDRVFMCPVRTSAVVTGEESTLSSRNTISSADTL 200
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +2
Query: 569 SRSTPRSEASSRISVCPSLST 631
SRSTPRS A SRI PS ST
Sbjct: 435 SRSTPRSRAGSRIRT-PSTST 454
>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
Length = 468
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 174 GLLPPRVKTQEEQVELCKLSIDRYENPLTSTSIL---WGSWTAMSICS 308
GL+P R+ +E+ + K S+ + L +S + WG+WT+ S+CS
Sbjct: 136 GLVPTRL--HQEEGKHAKESLLKKSIVLCHSSAVDGGWGAWTSWSLCS 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,447,498
Number of Sequences: 59808
Number of extensions: 533612
Number of successful extensions: 1611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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